Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,248,466 – 12,248,570 |
Length | 104 |
Max. P | 0.958171 |
Location | 12,248,466 – 12,248,570 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 82.24 |
Mean single sequence MFE | -26.24 |
Consensus MFE | -12.38 |
Energy contribution | -13.26 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.11 |
Mean z-score | -3.17 |
Structure conservation index | 0.47 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12248466 104 + 27905053 AAAAGGGGG----GAUCCUACCCCCC--ACCGCUACUUCUCAAGCUCCCCCUCCCCCCCUGGUGACCCCUUUACAUUGUAACGCAAUGACAAUGGCAACCUUCACACAGA ....(((((----(......))))))--...(((........))).............(((((((........(((((.....))))).....(....)..)))).))). ( -27.90) >DroSec_CAF1 62317 96 + 1 AAAAGGGGG----GAUCCUAACCCCC---CAUCUACUUCUCAAACUCCC-------CCCUGGUGACCCCUUUACAUUGCAACGCAAUGACAAUGGCAACCUUCACACAGA ....(((((----(.......)))))---)...................-------..(((((((........((((((...)))))).....(....)..)))).))). ( -26.60) >DroSim_CAF1 62546 100 + 1 AAAAGGGGG----GAUCCUAACCCCCACACCACUACUUCUCAAACUCCC------CCCCUGGUGACCCCUUUACAUUGCAACGCAAUGACAAUGGCAACCUUCACACAGA ....(((((----((..............................))))------)))(((((((........((((((...)))))).....(....)..)))).))). ( -25.51) >DroEre_CAF1 65845 97 + 1 AAAAGGGGAGGGCGGUUCGAGCCCCC---CCGCUACUUCCCAAGCC----------CCCCGAUGACGCCUUUACAUCGCAACGCAAUGACAAUGGCAACCUUCACACAGA ....((((.((((.......))))))---))((((........((.----------...(((((.........)))))....))........)))).............. ( -26.19) >DroYak_CAF1 64089 91 + 1 AAAAGGGG-----GGUCCGAAUCCCC---CCGCCACUUCCCAAGCC-----------CCCGAUGAGGCCUUUACAUCGCAACGCAAUGACAAUGGCAACCUUCACACAGA ....((((-----((.......))))---))((((........(((-----------........))).....(((.((...)).)))....)))).............. ( -25.00) >consensus AAAAGGGGG____GAUCCUAACCCCC___CCGCUACUUCUCAAGCUCCC_______CCCUGGUGACCCCUUUACAUUGCAACGCAAUGACAAUGGCAACCUUCACACAGA ....((((.............)))).................................(((((((........((((((...)))))).....(....)..)))).))). (-12.38 = -13.26 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:35 2006