Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,751,803 – 1,751,896 |
Length | 93 |
Max. P | 0.978155 |
Location | 1,751,803 – 1,751,896 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 86.31 |
Mean single sequence MFE | -44.40 |
Consensus MFE | -37.69 |
Energy contribution | -39.19 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.10 |
Mean z-score | -2.43 |
Structure conservation index | 0.85 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1751803 93 - 27905053 AGGAGCCAUUG---------UUGGCCAGGUGA------AGCAGCAGCUGAAGUGGGUGGCGAAGGCGGGCGUGGUGGCUGCUCCUGCAGACUGUCACUUGGCUGGGCG ....(((....---------..(((((((((.------.((((...(((.((.(((..((.(..((....))..).))..))))).))).))))))))))))).))). ( -39.10) >DroSec_CAF1 61299 99 - 1 AGGAGCCAUUG---------UUGGCCAGGUGGAGGCGGAGCAGCAGCUGAAGUGGGUGGCGAAGGCGGGCGCGGUGGCUGCUCCUGCAGACUGUCACUUGGCUGGGCG ....(((....---------..((((((((((..((((((((((.((((.....(.(.((....)).).).)))).)))))))).))......)))))))))).))). ( -47.60) >DroSim_CAF1 63662 99 - 1 AGGAGCCAUUG---------UUGGCCAGGUGGAGGCGGAGCAGCAGCUGAAGUGGGUGGCGAAGGCGGGCGCGGUGGCUGCUCCUGCAGACUGUCACUUGGCUGGGCG ....(((....---------..((((((((((..((((((((((.((((.....(.(.((....)).).).)))).)))))))).))......)))))))))).))). ( -47.60) >DroYak_CAF1 61090 102 - 1 AGGAGCCAUUGUUGGCAUUGUUGGCCAGGUGGAGGCGGAGCAGC-----AAGUGGGUGGUGGA-GCGGGCGUAAUGGCUGCUCCUGCAGAAUGUCACUUGGCUGGGCG ....((((....))))....(..(((((((((..((((((((((-----...((.((......-....)).))...)))))))).))......)))))))))..)... ( -43.30) >consensus AGGAGCCAUUG_________UUGGCCAGGUGGAGGCGGAGCAGCAGCUGAAGUGGGUGGCGAAGGCGGGCGCGGUGGCUGCUCCUGCAGACUGUCACUUGGCUGGGCG ....(((...............((((((((((..((((((((((.((((.....(.(.((....)).).).)))).)))))))).))......)))))))))).))). (-37.69 = -39.19 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:51 2006