Locus 4649

Sequence ID 3R_DroMel_CAF1
Location 12,237,666 – 12,237,763
Length 97
Max. P 0.582359
window7639

overview

Window 9

Location 12,237,666 – 12,237,763
Length 97
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 76.80
Mean single sequence MFE -22.98
Consensus MFE -9.01
Energy contribution -11.07
Covariance contribution 2.06
Combinations/Pair 1.26
Mean z-score -2.21
Structure conservation index 0.39
SVM decision value 0.10
SVM RNA-class probability 0.582359
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12237666 97 + 27905053
AAUUAGUCG-GAGCAUU-UUAAGACAGCUUAAUGGUUU-GAUUAUCAGGUUAACCCUUUGCCAAGCCAUUGGCCCUC-----UCUCACAAGCUU----CUUUAUGCAUA--
.........-..((((.-..((((.(((((...((.((-((((....)))))).))...(((((....)))))....-----......))))))----))).))))...-- ( -22.10)
>DroPse_CAF1 58308 96 + 1
AAUUAGCCAAGAGCCUUCUCAAGACUGUUUAAUAGUUC-CAGCA----------CCCUUGCCUGGC----GGCACUCCACACUAUCUAUAGCCUCACCCUUACUCCACCUC
.....(((..(((....)))..((((((...))))))(-(((((----------....)).)))).----)))...................................... ( -12.90)
>DroSec_CAF1 51494 95 + 1
AAUUAGUCG-GAGCAUU-UUAAGACAGCUUAAUGGUUU-GAUUAUCAGGCCAACCCUUUGCCAAGCCAUUGGCCCU-------CUCACAAGCUU----CUUUAUGCAUA--
.........-..((((.-..((((.(((((..((((((-(.....))))))).......(((((....)))))...-------.....))))))----))).))))...-- ( -26.90)
>DroSim_CAF1 51210 95 + 1
AAUUAGUCG-GAGCAUU-UUAAGACAGCUUAAUGGUUU-GAUUAUCAGUCCAACCCUUGGCCAAGCCAUUGGCCCU-------CUCACAAGCUU----CUUUAUGCAUA--
.........-..((((.-..((((.(((((...((((.-(((.....))).))))...((((((....))))))..-------.....))))))----))).))))...-- ( -26.90)
>DroEre_CAF1 53010 95 + 1
AAUUAGUCG-GAGCAUU-UUAAGACAGCUUAAUGGUUU-GAUUACCAAGCCAACCCUUUGCCAAGCCAUUGGCCCU-------CUCACAAGCCG----CCUUAUGCAUA--
.........-..(((..-.((((.(.((((..((((((-(.....))))))).......(((((....)))))...-------.....)))).)----.)))))))...-- ( -23.00)
>DroYak_CAF1 53041 94 + 1
AAUUAGUCG-GAG--UU-UUAAGACAGCUUAAUGGCUUGGAAUACCAAGCCAACCCUUUGCCAAGCCAAUGGCCCU-------CUCACAAGCGG----CUUUAUGCAUA--
.....((.(-(((--..-(((((....)))))((((((((....)))))))).......((((......)))).))-------)).))..(((.----.....)))...-- ( -26.10)
>consensus
AAUUAGUCG_GAGCAUU_UUAAGACAGCUUAAUGGUUU_GAUUAUCAGGCCAACCCUUUGCCAAGCCAUUGGCCCU_______CUCACAAGCUU____CUUUAUGCAUA__
............((((..........((((..((((((........)))))).......(((((....)))))...............))))..........))))..... ( -9.01 = -11.07 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:33 2006