Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,237,327 – 12,237,426 |
Length | 99 |
Max. P | 0.666002 |
Location | 12,237,327 – 12,237,426 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 74.13 |
Mean single sequence MFE | -23.47 |
Consensus MFE | -7.95 |
Energy contribution | -10.30 |
Covariance contribution | 2.35 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.34 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12237327 99 - 27905053 UCUU-----CUCCAUUAGACCUCAUAUUGUUUUGGAAAUGCUUAGGUUGAAAAUCAACCAAGUGGGCCAAGUGGCCUGGGCUUAUCUCUGGGUAUUC---AUUUU--UU ....-----.((((..((((........))))))))(((((((((((((.....)))))(((((((((....)))))..)))).....)))))))).---.....--.. ( -25.90) >DroSec_CAF1 51120 105 - 1 UCUUACCUUAUUUAUUAGACCUCAUAUUGUAUUGGAAAUGCUUAGGUUGAAAAUCAACCAAGUGGGCCAAGUGGCCUGGACUUAUCUGUGGAUAUUA---AUUUU-UUU ........(((((((.(((....................((((.(((((.....)))))))))(((((....))))).......))))))))))...---.....-... ( -22.20) >DroSim_CAF1 50832 105 - 1 UCUUACCUUAUCCAUUAGACCUCUUAUUGUAUUGGAAAUGCUUAGGUUGAAAAUCAACCAAGUGGGCCAAGUGGCCUGG-CUUAUCUGUGGAUAUUA---AUUUUUUUU ........(((((((.((.((..................((((.(((((.....)))))))))(((((....)))))))-)).....)))))))...---......... ( -27.40) >DroEre_CAF1 52619 100 - 1 UCUCACCUUAUCCAGUAAGCCUCAUAUUCUAUGCCAAAUUCUUGAGGCAAAAACCAACCAAGUGGGCCAAGUGGCCUGAGCUUAUCA--GGCU------AUUAUU-UUU .(((((.((((...))))((((((..................)))))).............)))))...((((((((((.....)))--))))------)))...-... ( -26.17) >DroYak_CAF1 52672 91 - 1 CCUCACCUU-UCCAUUAGACCUCAUAUUGUAUUGUAAAUUCUUGAGGUGAAAAUCAACCAA--------------CUGAGCUUAGCU--GGGUACUAGUACUAUU-UUU .........-...(((((((((((.(((........)))...))))))............(--------------((.(((...)))--.))).)))))......-... ( -15.70) >consensus UCUUACCUUAUCCAUUAGACCUCAUAUUGUAUUGGAAAUGCUUAGGUUGAAAAUCAACCAAGUGGGCCAAGUGGCCUGGGCUUAUCU_UGGAUAUUA___AUUUU_UUU ...................((..................((((.(((((.....)))))))))(((((....)))))............)).................. ( -7.95 = -10.30 + 2.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:32 2006