Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,234,802 – 12,234,896 |
Length | 94 |
Max. P | 0.819498 |
Location | 12,234,802 – 12,234,896 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 80.66 |
Mean single sequence MFE | -31.75 |
Consensus MFE | -19.47 |
Energy contribution | -20.33 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.07 |
Mean z-score | -2.16 |
Structure conservation index | 0.61 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12234802 94 + 27905053 GUGGCU------------GUUGCUUUAGCCA--ACAUAUUUAUCC---------U-CCGCCCUGCCCUGCUGCAUCCUGAUCAAUGGCAGCAGCCGCAGGGCCGCAGAAUGAUAUUGU .(((((------------(......))))))--(((...((((.(---------(-(.(((((((.(((((((.............)))))))..))))))).).)).))))...))) ( -37.72) >DroSec_CAF1 48586 94 + 1 GUGGCU------------GUUGCUUUAGCCA--ACAUAUUUAUCC---------U-CCGCCCUGCCCUGCUGCAUCCUGAUCAAUGGCAGCAGCCGCAGGGCCGCAGAAUGAUAUUGU .(((((------------(......))))))--(((...((((.(---------(-(.(((((((.(((((((.............)))))))..))))))).).)).))))...))) ( -37.72) >DroSim_CAF1 48291 94 + 1 GCGGCU------------GUUGCUUUAGCCA--ACAUAUUUAUCC---------U-CCGCCCUGCCCUGCUGCAUCCUGAUCAAUGGCAGCAGCCGCAGGGCCGCAGAAUGAUAUUGU ..((((------------(......))))).--(((...((((.(---------(-(.(((((((.(((((((.............)))))))..))))))).).)).))))...))) ( -37.12) >DroEre_CAF1 49989 106 + 1 GUUGCUGUAGCUGUAGCUGUAGCUGUAGCCA--ACAUAUUUAUCC---------U-CCGCCCUGCCCUGUUGCAUCCUGAUCAAUGGCAGCAGCCGCAGGGCCGCAGAAUGAUAUUGU (((((((((((((......))))))))).))--))....((((.(---------(-(.(((((((.(((((((.............)))))))..))))))).).)).))))...... ( -38.32) >DroYak_CAF1 50032 88 + 1 G------------------UAGCUGUAGCCA--ACAUAUUUAUCC---------A-CCGCCCUGCCCGACUGCAUCCUGAUCAAUGGCAGCAGCCGCAGGGCCGCAGAAUGAUAUUGU .------------------..((....))..--(((((((..((.---------.-(.(((((((..(.((((..((........))..))))).))))))).)..))..)))).))) ( -23.90) >DroAna_CAF1 48858 94 + 1 GA------------------------AGCCAAAACAUUUUUAUCCAGUCCAGUCUCCCGCCAGUCCUCCCUCCAUCCUGAUCAAUGGCAGCAGCCGCGGGGCCACAAAAUGAUAUUGU ..------------------------.......(((....((((..........(((((((((.............)))......(((....))))))))).........)))).))) ( -15.73) >consensus GUGGCU____________GUUGCUUUAGCCA__ACAUAUUUAUCC_________U_CCGCCCUGCCCUGCUGCAUCCUGAUCAAUGGCAGCAGCCGCAGGGCCGCAGAAUGAUAUUGU ..........................................................(((((((...(((((..((........))..))))).)))))))................ (-19.47 = -20.33 + 0.86)
Location | 12,234,802 – 12,234,896 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.66 |
Mean single sequence MFE | -35.48 |
Consensus MFE | -20.64 |
Energy contribution | -21.39 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.11 |
Mean z-score | -2.33 |
Structure conservation index | 0.58 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12234802 94 - 27905053 ACAAUAUCAUUCUGCGGCCCUGCGGCUGCUGCCAUUGAUCAGGAUGCAGCAGGGCAGGGCGG-A---------GGAUAAAUAUGU--UGGCUAAAGCAAC------------AGCCAC ........(((((.(.(((((((..(((((((.(((......)))))))))).))))))).)-)---------))))........--(((((........------------))))). ( -38.50) >DroSec_CAF1 48586 94 - 1 ACAAUAUCAUUCUGCGGCCCUGCGGCUGCUGCCAUUGAUCAGGAUGCAGCAGGGCAGGGCGG-A---------GGAUAAAUAUGU--UGGCUAAAGCAAC------------AGCCAC ........(((((.(.(((((((..(((((((.(((......)))))))))).))))))).)-)---------))))........--(((((........------------))))). ( -38.50) >DroSim_CAF1 48291 94 - 1 ACAAUAUCAUUCUGCGGCCCUGCGGCUGCUGCCAUUGAUCAGGAUGCAGCAGGGCAGGGCGG-A---------GGAUAAAUAUGU--UGGCUAAAGCAAC------------AGCCGC ........(((((.(.(((((((..(((((((.(((......)))))))))).))))))).)-)---------))))........--.((((........------------)))).. ( -37.90) >DroEre_CAF1 49989 106 - 1 ACAAUAUCAUUCUGCGGCCCUGCGGCUGCUGCCAUUGAUCAGGAUGCAACAGGGCAGGGCGG-A---------GGAUAAAUAUGU--UGGCUACAGCUACAGCUACAGCUACAGCAAC ....((((.((((((.((((((..(((.(((........))).).))..))))))...))))-)---------)))))....(((--(((((..(((....)))..)))..))))).. ( -38.10) >DroYak_CAF1 50032 88 - 1 ACAAUAUCAUUCUGCGGCCCUGCGGCUGCUGCCAUUGAUCAGGAUGCAGUCGGGCAGGGCGG-U---------GGAUAAAUAUGU--UGGCUACAGCUA------------------C .((((((...((..(.(((((((((((((..((........))..))))))..))))))).)-.---------.)).....))))--))((....))..------------------. ( -37.40) >DroAna_CAF1 48858 94 - 1 ACAAUAUCAUUUUGUGGCCCCGCGGCUGCUGCCAUUGAUCAGGAUGGAGGGAGGACUGGCGGGAGACUGGACUGGAUAAAAAUGUUUUGGCU------------------------UC .(((...(((((((..(((....)))..)..(((((......)))))........(..((((....)))..)..)...))))))..)))...------------------------.. ( -22.50) >consensus ACAAUAUCAUUCUGCGGCCCUGCGGCUGCUGCCAUUGAUCAGGAUGCAGCAGGGCAGGGCGG_A_________GGAUAAAUAUGU__UGGCUAAAGCAAC____________AGCCAC ....((((......(.(((((((.(((((..((........))..)))))...))))))).)............))))........................................ (-20.64 = -21.39 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:31 2006