| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,233,749 – 12,233,845 |
| Length | 96 |
| Max. P | 0.748740 |
| Location | 12,233,749 – 12,233,845 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.78 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -20.17 |
| Energy contribution | -21.50 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.748740 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12233749 96 - 27905053 ----UCGGCC---AGCCCAUUGAGAUCUUCAUUUGCUGAUCUUUCUGGGAACAUCUCGGCGGCGUUGACCCCAAAGGCAGCUCCGCUCUAGCUCCAGCUCCAA ----..(((.---((((((..((((((..(....)..))))))..))))........(((((.((((.((.....)))))).))))))).))).......... ( -30.50) >DroSec_CAF1 47488 90 - 1 ----UCGGCC---AGCCCAUUGAGAUCUUCAUUUGCUGAUCUUUCUGGGAACAUCUCGGCGGCGUUGACCCCAAAGGCAGCACCGCUCUUGCUC------CAG ----..(((.---((((((..((((((..(....)..))))))..))))........(((((.((((.((.....)))))).))))))).))).------... ( -30.90) >DroEre_CAF1 48904 96 - 1 ----UCGGCC---AGCCCAUUGAGAUCUUCAUUUGCUGAUCUUUCUGGGAACAUCUCGGCGGCGUUGACCCCAAAGGCAGCUCCGCUUCAGCUCCAGCUCCAA ----..((..---..((((..((((((..(....)..))))))..))))........(((((.((((.((.....)))))).)))))..(((....))))).. ( -30.50) >DroYak_CAF1 48856 85 - 1 ----UCGGCC---AGCCCAUUGAGAUCUUCAUUUGCUGAUCUUUCUGGGAACAUCUCGGCGGCGUUGACCCCAAAGGCAGC-----------UCCAGCUCCAG ----...(((---((((((..((((((..(....)..))))))..)))).....)).)))((.((((.((.....))))))-----------.))........ ( -25.90) >DroMoj_CAF1 65512 81 - 1 ---------------CCCAUUGAGAUCUUCAUUUGCUGAUCUUUCUGGGAACAUCUUUGCGGCGUUGACCCCAAAGGCAGA-------CAGACACAACGCACA ---------------((((..((((((..(....)..))))))..))))............((((((.((.....))..(.-------....).))))))... ( -20.10) >DroAna_CAF1 47767 97 - 1 UGGCUCAGCCUGCUGCCCAUUGAGAUCUUCAUUUGCUGAUCUUUCUGGGAACAUCUCGGCGGCGUUGACCCCAAAGGCAGCUCC---CCAGCUAAAGCUC--- .((.(((((((((((((((..((((((..(....)..))))))..)))).......)))))).))))).))....(((((((..---..))))...))).--- ( -32.01) >consensus ____UCGGCC___AGCCCAUUGAGAUCUUCAUUUGCUGAUCUUUCUGGGAACAUCUCGGCGGCGUUGACCCCAAAGGCAGCUCC___CCAGCUCCAGCUCCAA .......(((.....((((..((((((..(....)..))))))..))))........)))((.((((.((.....)))))).))................... (-20.17 = -21.50 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:29 2006