Locus 4645

Sequence ID 3R_DroMel_CAF1
Location 12,225,657 – 12,225,775
Length 118
Max. P 0.598531
window7634

overview

Window 4

Location 12,225,657 – 12,225,775
Length 118
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 79.94
Mean single sequence MFE -27.67
Consensus MFE -16.70
Energy contribution -17.32
Covariance contribution 0.62
Combinations/Pair 1.19
Mean z-score -1.84
Structure conservation index 0.60
SVM decision value 0.13
SVM RNA-class probability 0.598531
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12225657 118 - 27905053
CAUUGUUUGCGUGCAGCUAUUUUAUUAGGAACUUAUCUAUUCAAUUGCAUUUCAGCACUACAAAGUUUGUGCCAGGUAGGAGGAAGUUCCAAAAUAAAUAUAUUUGUAUGCCAACUUG
....(((.((((((((.(((((((((.(((((((.(((.......(((......)))((((...((....))...)))).))))))))))..)))))).))).)))))))).)))... ( -30.20)
>DroSec_CAF1 39244 112 - 1
CGCUGUUUGCGUGCAGCUAUUUUAUUAGGAACUUAUCUAUUCAAUUGAAUUUCAGCACUACAAAGUUCGUGGCAGGUAAAAGAAAGUUCCAAAAUAGAUAUAUUUGUAUAUA------
.((.....))((((((.(((((((((.(((((((.(((((((....))))....((.((((.......))))...))...))))))))))..)))))).))).))))))...------ ( -21.70)
>DroEre_CAF1 40356 118 - 1
UGCACUUUGCGUGCAGCUAUUUUAUUAGGAGCUUAUCUAUUCAAUUGAAUUUCAGCACUUAAAAGUUUGUGUCUUGGAGGAGGAUGUGCCAAAAUAGACAUAUUUGUAUGUAAUGUUG
...((.((((((((((.(((((((((..(.((.(((((.(((....)))(((((((((..........))))..)))))..))))).)))..)))))).))).)))))))))).)).. ( -25.20)
>DroYak_CAF1 39952 111 - 1
UGCACUUUGCGUGCAGCUAUUUUAUUAGGAACUUAUCUAUUCAAUUGAGUUUCAGCACUGAAAAGUU-------UGGAGCACGAUGUUCCAAAAUAAAAAUGCUUGCAUGUAAUGUUG
...((.(((((((((((..(((((((.((((((((..........))))))))...(((....)))(-------((((((.....))))))))))))))..)).))))))))).)).. ( -33.60)
>consensus
CGCACUUUGCGUGCAGCUAUUUUAUUAGGAACUUAUCUAUUCAAUUGAAUUUCAGCACUAAAAAGUUUGUG_CAGGGAGGAGGAAGUUCCAAAAUAAAUAUAUUUGUAUGUAAUGUUG
......((((((((((.(((((((((.(((((((.(((((((....))))......(((....)))..............))))))))))..)))))).))).))))))))))..... (-16.70 = -17.32 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:28 2006