Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,224,751 – 12,224,853 |
Length | 102 |
Max. P | 0.860724 |
Location | 12,224,751 – 12,224,853 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 88.33 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -19.80 |
Energy contribution | -20.04 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.23 |
Mean z-score | -1.89 |
Structure conservation index | 0.79 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12224751 102 + 27905053 UCAAAAUUUUCACGAAUUUAAUUUGCCGCAAGGGGAGUGGGAAACUGAAUGUGACUGGGCUGAAAGUUCAGUUACACAAAAAAAAUAAUUAACUUCGGACGG .........((.((((.(((((((.((....)).))))((....))...(((((((((((.....))))))))))).............))).))))))... ( -27.70) >DroSec_CAF1 38363 102 + 1 ACAAAAUUUUCACGAAUUUAAUUUGCCGCAAGCGGAGUGGGAAACUAAAUGUGGCUGGGCUGAAGGUUCAGUUACACAAAAAUAAUAAUUAAUUUAGGACGG ............((.(((((.(((.((((.......)))).))).)))))((((((((((.....))))))))))........................)). ( -22.60) >DroSim_CAF1 38157 102 + 1 UCAAAAUUUUCACGAAUUUAAUUUGCCGCAAGCGGAGUGGGAAACUGAAUGUGGCUGGACUUAAGGUUCAGUUACACAAAAAUAAUAAUUAACUUCGAAAGG ............((((.((((((..(((....)))...((....))...(((((((((((.....)))))))))))..........)))))).))))..... ( -25.60) >DroEre_CAF1 39383 102 + 1 UCAAAAUUUUCACAAAUUCAAUUUCCCGCAAACGGAGUGGGAAACUCGGUGUGGCUGGGCUGAAGGUUCAGUUACACAACAAAAAUAAUUAACUUCGGUCGG .....................((((((((.......))))))))..((((((((((((((.....))))))))))))..............((....)))). ( -29.60) >DroYak_CAF1 39012 102 + 1 UCAAAAUUUUCACAAAUUCAAUUUGCUGCAAAUGGAGUGGGAAACUGUGUUUGGCUGGGCUGAAGGUUCAGUUACACCACAAAAAUAAUUAACUUCGGUCGA .....((((.(((((((...))))).)).))))(((((((....))(((..(((((((((.....)))))))))...)))...........)))))...... ( -20.50) >consensus UCAAAAUUUUCACGAAUUUAAUUUGCCGCAAGCGGAGUGGGAAACUGAAUGUGGCUGGGCUGAAGGUUCAGUUACACAAAAAAAAUAAUUAACUUCGGACGG .........................(((....((((((((....))...(((((((((((.....)))))))))))...............))))))..))) (-19.80 = -20.04 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:27 2006