Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,221,415 – 12,221,510 |
Length | 95 |
Max. P | 0.993622 |
Location | 12,221,415 – 12,221,510 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.43 |
Mean single sequence MFE | -31.41 |
Consensus MFE | -21.55 |
Energy contribution | -22.05 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.86 |
Structure conservation index | 0.69 |
SVM decision value | 2.41 |
SVM RNA-class probability | 0.993622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12221415 95 + 27905053 UACAAUAUA---CUUUUGUGCGAGCCGUGUCAUUUGUUUACAGUGCAUCUGAACGAAGGCUGCGACUAAGAAUCUCGGAAGAAUCGGUCGCAGGCUCA (((((....---...))))).(((((..(((.((((((..(((.....))))))))))))(((((((..((...((....)).)))))))))))))). ( -30.90) >DroSec_CAF1 35039 86 + 1 UACGUGUCAGA------------UCCAUCUCAUUUGUUUACAGUGUAUCUGAACGAAGCCUGCGACUGAGAAUCUCGGAAGAAUCGGUCGCAGGCUCA ..(((.(((((------------(.(((..............))).))))))))).(((((((((((((.....((....)).))))))))))))).. ( -36.04) >DroSim_CAF1 34827 98 + 1 UACGUUUCAGAUCCUUUGUGCGAUCCAUCUCAUUUGUUUACAGUGUAUCUGAACGAAGACUGCGACUGAGAAUCUCGGAAGAAUCGGUCGCAGGCUCA ..((((.(((((.(.((((((((..........))))..)))).).)))))))))....((((((((((.....((....)).))))))))))..... ( -32.10) >DroYak_CAF1 35649 93 + 1 UAC-----AGAUCUUUUGUGCUAGUAGUCUCAUUUCUUUCCAGUGUAUCUGAACGAAAGCUGCGACUGAGAAUCUCGGAAGAAUCGGUCGCAGGCUCA ...-----....(((((((.....(((...((((.......))))...))).)))))))((((((((((.....((....)).))))))))))..... ( -26.60) >consensus UACGUUUCAGA_CUUUUGUGCGAGCCAUCUCAUUUGUUUACAGUGUAUCUGAACGAAGGCUGCGACUGAGAAUCUCGGAAGAAUCGGUCGCAGGCUCA ................................((((((..(((.....)))))))))..((((((((((.....((....)).))))))))))..... (-21.55 = -22.05 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:26 2006