Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,205,418 – 12,205,531 |
Length | 113 |
Max. P | 0.865916 |
Location | 12,205,418 – 12,205,531 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.99 |
Mean single sequence MFE | -35.57 |
Consensus MFE | -31.21 |
Energy contribution | -30.41 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.14 |
Mean z-score | -1.79 |
Structure conservation index | 0.88 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12205418 113 - 27905053 ----UUUCUUUGCAGGCCCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAAGUCUUCUUUGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGC-CACC-- ----......((.((((((.((((((...(((...(((.(((...((((..(((((((....))))))).))))))).))).))).)))))))))))).))...(((....))-)...-- ( -35.10) >DroVir_CAF1 24931 120 - 1 CUUUUGUUCUUGCAGGCUCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAGGUCUUCUUCGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGGACAACAG ((.((((((((((.((((((...(((....))).((((.(((...((((..(((((((....))))))).))))))).))))))))))..((((.......)))))))))..))))).)) ( -36.30) >DroGri_CAF1 27114 120 - 1 UUUUUGUUCUUGCAGGCUCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAGGUCUUCUUUGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGGACAACAA ...((((((((((.((((((...(((....))).((((.(((...((((..(((((((....))))))).))))))).))))))))))..((((.......)))))))))..)))))... ( -34.00) >DroWil_CAF1 21926 113 - 1 ----UCUUCUUCCAGGCCCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAGGUCUUCUUUGCCACGCACAGCAUUGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGA-AGGU-- ----(((((..((((((((.((((((.((((.((((...(((...((((..(((((((....))))))).))))))))))))))).))))))))))))......)).....))-))).-- ( -34.10) >DroMoj_CAF1 27181 120 - 1 UUCUUGUUCUUGCAGGCUCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAGGUCUUCUUUGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGGACAAGAG .((((((((((((.((((((...(((....))).((((.(((...((((..(((((((....))))))).))))))).))))))))))..((((.......)))))))))..))))))). ( -38.80) >DroPer_CAF1 19343 111 - 1 ----UUUCUUUGCAGGCCCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAAGUCUUCUUUGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUCCAUCAGGUAAGUGC-CA---- ----......((.((((((.((((((...(((...(((.(((...((((..(((((((....))))))).))))))).))).))).)))))))))))).))...(((....))-).---- ( -35.10) >consensus ____UGUUCUUGCAGGCCCUAAAUGGAUUUCUAAUGAUACUGACAUGCGAAGGCGAGGUCUUCUUUGCCACGCACAGCAUCGAGAGCUAUUUGGGUUUUCAUCAGGUAAGUGG_CAAC__ ........(((((((((((.((((((...(((...(((.(((...((((..(((((((....))))))).))))))).))).))).)))))))))))).......))))).......... (-31.21 = -30.41 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:22 2006