Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,193,510 – 12,193,617 |
Length | 107 |
Max. P | 0.727598 |
Location | 12,193,510 – 12,193,617 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 90.19 |
Mean single sequence MFE | -38.60 |
Consensus MFE | -32.56 |
Energy contribution | -33.38 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.03 |
Mean z-score | -1.61 |
Structure conservation index | 0.84 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727598 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12193510 107 + 27905053 UCUUAGAUGUUGGGCUCGAGAUGCCGAUGUCGAAUCCGAUGUCGACUCCAACCGAUCGGCGGUGGGCUCACCUUCGCCCGCGUCUUCAGUUGACGGAGUAUCUUAAA .....((((((((..((((.((....)).))))..)))))))).(((((..((....))..((((((........))))))(((.......))))))))........ ( -39.70) >DroSec_CAF1 7249 107 + 1 UCUUAGAUGUUGGGCUCGAGAUGCCGAUGUCGAAUCCGAUGUCGACUCCAACCGAUCGGCGGCGGGCUCACCUUCGCCCGCGUCUCCAGUUGACGGAGUAUCUUAAA .....((((((((..((((.((....)).))))..)))))))).(((((..((....))..((((((........))))))(((.......))))))))........ ( -41.60) >DroEre_CAF1 7416 107 + 1 UCUUAGAUGUUGGGCUCGAGAUGCCGAUGCCGUUUCCGAAGUCGAUGCCAACCGAUCGGCGGCGGGCUCACCUUCGCCCGCGUCUUCAGUUGACGGAGUAUCUUAAA .................(((((((.....(((((..(((((.(..((((........))))((((((........))))))).)))).)..))))).)))))))... ( -37.20) >DroYak_CAF1 7152 95 + 1 UCUAAGAUGUUGGGCUCGAGAUUCCGAU------------GUCGAUUCCAACCGAUCGGCGGCGGGCUCACCUUCGCCCGCGUCUUCAGUUGACGGAGUAUCUUAAA ..(((((((((((..((((.((....))------------.))))..))))(((.(((((.((((((........))))))(....).))))))))..))))))).. ( -35.90) >consensus UCUUAGAUGUUGGGCUCGAGAUGCCGAUGUCGAAUCCGAUGUCGACUCCAACCGAUCGGCGGCGGGCUCACCUUCGCCCGCGUCUUCAGUUGACGGAGUAUCUUAAA .................(((((((((((((((....)))))))).......(((.(((((.((((((........))))))(....).)))))))).)))))))... (-32.56 = -33.38 + 0.81)
Location | 12,193,510 – 12,193,617 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 90.19 |
Mean single sequence MFE | -36.72 |
Consensus MFE | -29.23 |
Energy contribution | -29.35 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.56 |
Structure conservation index | 0.80 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12193510 107 - 27905053 UUUAAGAUACUCCGUCAACUGAAGACGCGGGCGAAGGUGAGCCCACCGCCGAUCGGUUGGAGUCGACAUCGGAUUCGACAUCGGCAUCUCGAGCCCAACAUCUAAGA ....((((....((((.......)))).((((...((((....))))((((((..((((((..((....))..)))))))))))).......))))...)))).... ( -38.00) >DroSec_CAF1 7249 107 - 1 UUUAAGAUACUCCGUCAACUGGAGACGCGGGCGAAGGUGAGCCCGCCGCCGAUCGGUUGGAGUCGACAUCGGAUUCGACAUCGGCAUCUCGAGCCCAACAUCUAAGA ....((((.(((((.....)))))....((((...((((....))))((((((..((((((..((....))..)))))))))))).......))))...)))).... ( -39.80) >DroEre_CAF1 7416 107 - 1 UUUAAGAUACUCCGUCAACUGAAGACGCGGGCGAAGGUGAGCCCGCCGCCGAUCGGUUGGCAUCGACUUCGGAAACGGCAUCGGCAUCUCGAGCCCAACAUCUAAGA ....((((....((((.......)))).((((..(((((.(((.((((.....)))).))).((((..(((....)))..)))))))))...))))...)))).... ( -37.90) >DroYak_CAF1 7152 95 - 1 UUUAAGAUACUCCGUCAACUGAAGACGCGGGCGAAGGUGAGCCCGCCGCCGAUCGGUUGGAAUCGAC------------AUCGGAAUCUCGAGCCCAACAUCUUAGA ((((((((.....(((.......)))((((((........)))))).........(((((..((((.------------((....)).))))..))))))))))))) ( -31.20) >consensus UUUAAGAUACUCCGUCAACUGAAGACGCGGGCGAAGGUGAGCCCGCCGCCGAUCGGUUGGAAUCGACAUCGGAUUCGACAUCGGCAUCUCGAGCCCAACAUCUAAGA ....((((....((((.......)))).((((...((((....))))((((((..((((....)))).(((....))).)))))).......))))...)))).... (-29.23 = -29.35 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:20 2006