Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,191,618 – 12,191,709 |
Length | 91 |
Max. P | 0.794385 |
Location | 12,191,618 – 12,191,709 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 72.72 |
Mean single sequence MFE | -20.46 |
Consensus MFE | -9.59 |
Energy contribution | -10.23 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.23 |
Mean z-score | -1.85 |
Structure conservation index | 0.47 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12191618 91 + 27905053 ----CAAAA---AUAUCUCCUCAUAGGUAAUCACCUAUGGGUGAUAACAAUGUGUCUGCU-GGUUGGUUUUUUU-AUUUUUUGUCACUGCGAA----GAGACCA ----.....---.((((.((.(((((((....))))))))).))))..............-...((((((((((-...............)))----))))))) ( -21.96) >DroSec_CAF1 5346 92 + 1 ----CAAAA---AUAUCUCCUCAUAGGUAAUCACCUAUGAGUGAUAACAAUGUAUCUGCU-GGUCGGUUUAUUUUUUUUUUUGUCACUACGAA----GAGACCA ----.....---.((((..(((((((((....))))))))).))))..............-((((............(((((((....)))))----)))))). ( -21.10) >DroSim_CAF1 5314 89 + 1 ----CAAAA---AUAUCUCCUCAUAGGUAAUCACCUAUGGGUGAUAACAAUGUAUCUGCU-GGUCGGUUUAUUUU---UUUUGUCACUACGAA----GAGACCA ----.....---.((((.((.(((((((....))))))))).))))..............-((((.........(---((((((....)))))----)))))). ( -21.70) >DroEre_CAF1 5579 85 + 1 ----CAAAA---AUAUCUCCUCAUAGGUAAUCACCCCUGGGUGAUAAUAAUGUAUUUACGCGUUCGGUU--------UUGUUGUCACUACGAA----GAGACCA ----.....---.(((((......)))))((((((....))))))...(((((......))))).((((--------((.((((....)))).----)))))). ( -19.60) >DroWil_CAF1 5971 102 + 1 AAAACAAAACUGAUAUCAGCCAAUAACUAACUACUGAAGUCUGAUGGAUGUAAAGCUGCU-UA-AGUUUUGUUUUUUUUUUUAUGUUUUCUAACCUGUAACCCA (((((((((((.....((((..(((.(((.(.((....))..).))).)))...))))..-..-)))))))))))............................. ( -15.20) >DroYak_CAF1 5312 84 + 1 ----CAAAA---AUAUCUCCUCAUAGGUAAUAACCUAUGGGUGAUAAAAAUGUAUUUGCU-GGUCGGUU--------UUGUUGUCACUACGAA----AAGACUA ----.....---.((((.((.(((((((....))))))))).)))).............(-((((..((--------((((.......)))))----).))))) ( -23.20) >consensus ____CAAAA___AUAUCUCCUCAUAGGUAAUCACCUAUGGGUGAUAACAAUGUAUCUGCU_GGUCGGUUU_UUU___UUUUUGUCACUACGAA____GAGACCA .............((((.((.(((((((....))))))))).)))).......................................................... ( -9.59 = -10.23 + 0.64)
Location | 12,191,618 – 12,191,709 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 72.72 |
Mean single sequence MFE | -20.20 |
Consensus MFE | -9.59 |
Energy contribution | -9.98 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.31 |
Mean z-score | -1.85 |
Structure conservation index | 0.47 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12191618 91 - 27905053 UGGUCUC----UUCGCAGUGACAAAAAAU-AAAAAAACCAACC-AGCAGACACAUUGUUAUCACCCAUAGGUGAUUACCUAUGAGGAGAUAU---UUUUG---- ..(((((----(((((((((.........-.............-........)))))).((((((....)))))).......))))))))..---.....---- ( -19.41) >DroSec_CAF1 5346 92 - 1 UGGUCUC----UUCGUAGUGACAAAAAAAAAAAUAAACCGACC-AGCAGAUACAUUGUUAUCACUCAUAGGUGAUUACCUAUGAGGAGAUAU---UUUUG---- ..(((((----(((((((.(.......................-(((((.....)))))((((((....))))))..)))))))))))))..---.....---- ( -21.50) >DroSim_CAF1 5314 89 - 1 UGGUCUC----UUCGUAGUGACAAAA---AAAAUAAACCGACC-AGCAGAUACAUUGUUAUCACCCAUAGGUGAUUACCUAUGAGGAGAUAU---UUUUG---- ..(((((----(((((((.(......---..............-(((((.....)))))((((((....))))))..)))))))))))))..---.....---- ( -23.50) >DroEre_CAF1 5579 85 - 1 UGGUCUC----UUCGUAGUGACAACAA--------AACCGAACGCGUAAAUACAUUAUUAUCACCCAGGGGUGAUUACCUAUGAGGAGAUAU---UUUUG---- ..(((((----(((((((.(.......--------..........((....))......((((((....))))))..)))))))))))))..---.....---- ( -24.00) >DroWil_CAF1 5971 102 - 1 UGGGUUACAGGUUAGAAAACAUAAAAAAAAAAACAAAACU-UA-AGCAGCUUUACAUCCAUCAGACUUCAGUAGUUAGUUAUUGGCUGAUAUCAGUUUUGUUUU .............................(((((((((((-..-..(((((..........(.((((.....)))).).....))))).....))))))))))) ( -15.96) >DroYak_CAF1 5312 84 - 1 UAGUCUU----UUCGUAGUGACAACAA--------AACCGACC-AGCAAAUACAUUUUUAUCACCCAUAGGUUAUUACCUAUGAGGAGAUAU---UUUUG---- ..(((..----........))).....--------........-..............((((.(((((((((....))))))).)).)))).---.....---- ( -16.80) >consensus UGGUCUC____UUCGUAGUGACAAAAA___AAA_AAACCGACC_AGCAGAUACAUUGUUAUCACCCAUAGGUGAUUACCUAUGAGGAGAUAU___UUUUG____ ..........................................................((((.(((((((((....))))))).)).))))............. ( -9.59 = -9.98 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:18 2006