Locus 4635

Sequence ID 3R_DroMel_CAF1
Location 12,189,283 – 12,189,390
Length 107
Max. P 0.906831
window7622

overview

Window 2

Location 12,189,283 – 12,189,390
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 88.22
Mean single sequence MFE -23.74
Consensus MFE -17.55
Energy contribution -18.35
Covariance contribution 0.80
Combinations/Pair 1.16
Mean z-score -2.33
Structure conservation index 0.74
SVM decision value 1.05
SVM RNA-class probability 0.906831
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12189283 107 - 27905053
CUAUUGAGCUUUCCAUCUAAGGGAAAUAUCAAUUGGGUUUAAAGAGCUUCUAGUAUGAGGGGACCAUCUCUCCUUAUAAGUAACCCAUUCAAGCCCAACUACUUAAA
...((((..(((((.......)))))..))))((((((((.((..........((((((((((.....)))))))))).........)).))))))))......... ( -27.51)
>DroSec_CAF1 3064 107 - 1
CUAUUGAGCUUUCCAUCUAAGGGAAAUAUCAAUUGGGCUUAAAGAGCUUCAAGUAUGAGGGGACCAUCUCUCCUUAUAAGUAACCCAUUCAAACCCAACUACUUAAA
...((((..(((((.......)))))..))))(((((.((.((..........((((((((((.....)))))))))).........)).)).)))))......... ( -23.31)
>DroSim_CAF1 3048 107 - 1
CUAUUGAGCUUUCCAUCUAAGGGAAAUAUCAAUUGGGUUUAAAGAGCUUCUAGUAUGAGGGGACCAUCUCACCUUAUAGGUAACCCAUUCAAACCCAACUACUUAAA
...((((..(((((.......)))))..))))((((((((.............(((((((.((.....)).)))))))((....))....))))))))......... ( -24.20)
>DroEre_CAF1 3346 102 - 1
-----GAGCUUUCCAUCCAAAGGAAAUAUCAAUUCGACUUAACGAGCUUCUACUCUGAGGGGAACAUCUCUCCUUAAAAGUAACCCAUUAAAAUCCAACUACAUAAU
-----(((((((((.......))))).......(((......))))))).((((.((((((((.....))))))))..))))......................... ( -18.30)
>DroYak_CAF1 2991 107 - 1
CUGUGGAGCUUUCCAUCCAAGGGAAAUAUCAAUUUCGUUUAACGAGCUUCUACUCUGAGGGGACCAUCUCUCCUUAUAAGUAACCCAUUCGAAAGCAACUACUUAAA
..((((.((((((.......(((..........((((.....))))....((((.((((((((.....))))))))..)))).)))....))))))..))))..... ( -25.40)
>consensus
CUAUUGAGCUUUCCAUCUAAGGGAAAUAUCAAUUGGGUUUAAAGAGCUUCUAGUAUGAGGGGACCAUCUCUCCUUAUAAGUAACCCAUUCAAACCCAACUACUUAAA
.....((..(((((.......)))))..))..((((((((.............((((((((((.....))))))))))............))))))))......... (-17.55 = -18.35 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:16 2006