Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,183,572 – 12,183,683 |
Length | 111 |
Max. P | 0.531008 |
Location | 12,183,572 – 12,183,683 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 86.64 |
Mean single sequence MFE | -24.61 |
Consensus MFE | -16.13 |
Energy contribution | -17.57 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.29 |
Mean z-score | -1.64 |
Structure conservation index | 0.66 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.531008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12183572 111 - 27905053 AAUGUUAAAUAUAAGCCUUAGAUCUUUAAAAUCGGAGUAUGAAUAGGGCGCUGGAUACGACCUACUAAACUUCCUGGUCUGAUUUAAGCAUGACCUAAUGAGGUAUUUAAU ...(((((((((...(.((((.((....((((((((.((.(((((((.((.......)).))))......))).)).))))))))......)).)))).)..))))))))) ( -22.40) >DroSim_CAF1 8723 111 - 1 AAUGUUAAAUAUAAACCUCAGAUCUUUAAAAUCGGAUUUUAAAUAGGGCGCUGGAUGCCACCUACUAAACUUCCUGGCCUGAUUUAAGCAUGCCCUAAUGAGGUAUUUAAU ...(((((((....(((((((((((........))))).....(((((((((((((((((..............))))...)))).)))..)))))).))))))))))))) ( -26.24) >DroEre_CAF1 7569 111 - 1 AAUGUUAAAUAUAAACCUUAGAUCUUACAAAUCUGAGUAUUAAUAGGGCACUGGAUACGAACUACUAAGCUUCCUGGCCCGAUUUAAGCAUGCCCCAAAGGGGUAUAUAAU ....((((((.(((..(((((((.......)))))))..)))...((((...(((..(..........)..)))..)))).))))))..(((((((...)))))))..... ( -28.50) >DroYak_CAF1 8147 111 - 1 AAUGUGAAAUAUAAACCUUAGAUCUUAAAAAUCGGAGUAUUAAUAGGGCGCUGGACACCACCUACUAAGCUUCCUGACCCGAUUUAUGCAUGCCCCAAUAAGGCACAUAAU ..((((......................(((((((.((.....(((((.(((((......)).....))).)))))))))))))).....((((.......)))))))).. ( -21.30) >consensus AAUGUUAAAUAUAAACCUUAGAUCUUAAAAAUCGGAGUAUUAAUAGGGCGCUGGAUACCACCUACUAAACUUCCUGGCCCGAUUUAAGCAUGCCCCAAUGAGGUAUAUAAU .........((((.(((((((((.......)))...((((((((.((((...(((................)))..)))).)))))))).........)))))).)))).. (-16.13 = -17.57 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:09 2006