Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,750,080 – 1,750,179 |
Length | 99 |
Max. P | 0.601853 |
Location | 1,750,080 – 1,750,179 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.26 |
Mean single sequence MFE | -22.08 |
Consensus MFE | -13.69 |
Energy contribution | -13.58 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.11 |
Mean z-score | -1.44 |
Structure conservation index | 0.62 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1750080 99 - 27905053 UCCGC---CCUUAAAACCGCCCGCCCUC----UGGCUGGCUAUCUAC--------GCCGUCGCGUUCUUGUCUGUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU ..(((---......(((.(((.(((...----.))).))).....((--------((....))))........)))....(((((.((((((.....)))))).)))))))).. ( -25.80) >DroPse_CAF1 50754 96 - 1 GCCUC----------CCCACCCACUCCCCAGCAUCCACGCUAUCUGU--------GCUGUCGCGUCCUUGUCUCUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU .....----------.............((((((...........))--------))))((((.....((........))(((((.((((((.....)))))).))))))))). ( -19.30) >DroSec_CAF1 59209 99 - 1 ACCGC---CCAUAAUCCCGUCCGCCCCC----UGGCUGGCUAUCUAC--------GCCGUCGCGUCCUUGUCUCUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU ..(((---..........(((.(((...----.))).))).....((--------((....))))...............(((((.((((((.....)))))).)))))))).. ( -22.90) >DroSim_CAF1 61543 99 - 1 ACCGC---CCAUAAUCCCGCCCGCCCCC----UGGCUGGCUAUCUAC--------GCCGUCGCGUCCUUGUCUCUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU ..(((---..........(((.(((...----.))).))).....((--------((....))))...............(((((.((((((.....)))))).)))))))).. ( -25.60) >DroYak_CAF1 59220 105 - 1 UCCGUAAUCCACAAUCCCGCCCGCUCCC---------GGCUAUCUACUCCUUGUCGCUAUCGCGUCCCUGUCUCUUAUCAAUAUGCACUCGUAUUAAGUGAGUUUAUACGCGAU ((((((............(((.......---------))).....((((((((.(((....))).).............((((((....))))))))).))))...)))).)). ( -16.50) >DroAna_CAF1 54443 97 - 1 ACCGC---CCAUCACUGCCUCCAUCAC------GCCACAGUAUCUGC--------UCUGUCGCGUCCUUGUCUCUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU ..(((---.............((..((------((.((((.......--------.)))).))))...))..........(((((.((((((.....)))))).)))))))).. ( -22.40) >consensus ACCGC___CCAUAAUCCCGCCCGCCCCC____UGGCUGGCUAUCUAC________GCCGUCGCGUCCUUGUCUCUUAUCAAUAUGCACUCGCAUUAAGUGAGUUUAUAUGCGAU ..........................................................(((((.....((........))(((((.((((((.....)))))).)))))))))) (-13.69 = -13.58 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:49 2006