Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,177,323 – 12,177,543 |
Length | 220 |
Max. P | 0.903603 |
Location | 12,177,323 – 12,177,428 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 71.41 |
Mean single sequence MFE | -27.26 |
Consensus MFE | -13.86 |
Energy contribution | -14.78 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.12 |
Mean z-score | -1.86 |
Structure conservation index | 0.51 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12177323 105 + 27905053 UCUGCAGCUGACAUUUCUA----CAAAUGGCCUCAACAAGCCACUUUGCGCCUCAUUUGCUUGCACCACCCGGCAAGUUACCUCCAAAAUCCUCUAGUCUGCGGCGCCG .(((((((((.........----((((((((........)))).))))..........((((((........))))))................))).))))))..... ( -23.00) >DroSec_CAF1 2094 80 + 1 GCUGCAGCAGACAUUUCUA----CAAAUGGCUUCAACAAGCCACUUUGCGCUUCAUUUGCUUGCACCACCCGGCAAGU-------------------------GCGCCG (.(((((((((........----((((((((((....)))))).)))).......))))).)))).)...((((....-------------------------..)))) ( -22.76) >DroSim_CAF1 2100 105 + 1 GCUGCAGCGGACAUUUUUA----CAAAUGGCAUCAACAAGCCACUUUGCGCCUCAUUAGCUUGCACCACCCGGCAAGUUCCCUCCAAAAACCUCUAGUCUGCGGCGCCG (((((((((((..(((((.----((((((((........)))).)))).........(((((((........)))))))......)))))..))).).))))))).... ( -29.20) >DroEre_CAF1 1939 106 + 1 GUUU--GUGGAAAUGUCAGUUCACAAAUGGCCUCAACAAGCCACUUUGCGCCUCAUUUGCUUGCACCACCCGGCAAG-CCCCUCCAAAAACUUCUAGCCUGCGGCGCCG ((((--(((((........)))))))))(((........))).....(((((......((((((........)))))-).................(....)))))).. ( -28.50) >DroWil_CAF1 5503 90 + 1 -UUUCUGUUGGCAUUCAAA----CAAAUUGCUU-GGCCAACCACCUAGCACCUCAUUUGUUUGCUC------GCACG-CCUCUCA------UUGGGGCCUGAGGUGCCG -.....((((((...(((.----....)))...-.))))))......((((((((..(((......------))).(-((((...------..))))).)))))))).. ( -30.30) >DroYak_CAF1 2025 105 + 1 GCUGCCGCUGUAAUUUCAG----CAAAUGGCCUCAACAAGCCACUUUGCGCCUCAUUUGCUUGCACCACCCGGCAAGUCCCCUCCAAAAACUUCUAGCUUGCGGCGCCG ((.(((((.((.......(----((((((((........)))).))))).........((((((........))))))..................))..))))))).. ( -29.80) >consensus GCUGCAGCUGACAUUUCAA____CAAAUGGCCUCAACAAGCCACUUUGCGCCUCAUUUGCUUGCACCACCCGGCAAGUCCCCUCCAAAAACUUCUAGCCUGCGGCGCCG ...........................((((........))))....(((((.((...((((((........)))))).....................)).))))).. (-13.86 = -14.78 + 0.92)
Location | 12,177,428 – 12,177,543 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 77.30 |
Mean single sequence MFE | -35.89 |
Consensus MFE | -19.22 |
Energy contribution | -21.47 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.21 |
Mean z-score | -1.72 |
Structure conservation index | 0.54 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12177428 115 - 27905053 GCUACUUCUCCAUGUGCGGUUUUUAGCACCGGAUGACGGUUA-UUGCGAGCCGUUUUUAAUUUAUAGACGCAUUUAUCAUGCCAUGAUUGCC-CGUGUGCUGAAAACAGAAGUG-CCC- ((.((((((.........((((((((((((((..(((((((.-.....)))))))..............(((.((((......)))).))))-)).))))))))))))))))))-)..- ( -36.70) >DroPse_CAF1 3535 117 - 1 GUAACUUCUCCAUGUGCGGGUUUUAGCACCGGAUGGCGUUUU-AUGCGAGCCGUUUUUACUUUAUUGACGCAUUUAUCAUGCGUUGAUUGCCCCGUGUGCUGAAAGCAAAAAAGGCGG- .......(.((...(((...(((((((((((((((((.....-......))))).........((..((((((.....))))))..))....))).)))))))))))).....)).).- ( -34.10) >DroGri_CAF1 15475 117 - 1 GUGGCUUCUACUUGUGUGGUUUUUAGCACCGGAUGGCGUUUU-AUGCCACUGGUGAAUAGUUUAUUGACGCAUUUAUCAUGCGUCGAUUACC-UGCAUGCUGAAAGCAAAGGGGGCAGC ...((((((((....)).((((((((((((((.((((((...-)))))))))))...(((...((((((((((.....))))))))))...)-))...)))))))))...))))))... ( -44.30) >DroMoj_CAF1 2091 116 - 1 GUGGCUACUCCUUGUGCGGUUUUUAGCACCGGAUGGCGUUUAUAUGCCAGCCAUUUUCACUUUAUUGACGCAUUUAUCAUGCGUCGAUCACC-UUCGUACCGAGAGCAAAAU--GCGGC ((((((..(((..((((........)))).))).(((((....))))))))))).........((((((((((.....))))))))))..((-((((...)))).((.....--)))). ( -36.60) >DroAna_CAF1 2448 113 - 1 GCGACUUCUCCUUAAGUGGUUUUUAGCACCGGAAGGCGGUUU-AUGCGAGUCUCUUUUUCUUUAUUGACGCAUUUAUCAUGCGUUGAUGGGC-CAUUCCGCCAAUACAAAA-UA-AG-- ((.......((......))......)).......(((((...-..(((((.......))).((((..((((((.....))))))..))))))-....))))).........-..-..-- ( -27.52) >DroPer_CAF1 3817 117 - 1 GUAACUUCUCCAUGUGCGGUUUUUAGCACCGGAUGGCGUUUU-AUGCGAGCCGUUUUUACUUUAUUGACGCAUUUAUCAUGCGUUGAUUGCCCCGUGUGCUGAAAGCAAAAAAGGCGG- .......(.((.......(((((((((((((((((((.....-......))))).........((..((((((.....))))))..))....))).)))))))))))......)).).- ( -36.12) >consensus GUGACUUCUCCAUGUGCGGUUUUUAGCACCGGAUGGCGUUUU_AUGCGAGCCGUUUUUACUUUAUUGACGCAUUUAUCAUGCGUUGAUUGCC_CGUGUGCUGAAAGCAAAAAAGGCGG_ ..................(((((((((((.(((((((............))))))).......((((((((((.....))))))))))........)))))))))))............ (-19.22 = -21.47 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:04 2006