Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,175,474 – 12,175,572 |
Length | 98 |
Max. P | 0.746716 |
Location | 12,175,474 – 12,175,572 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.43 |
Mean single sequence MFE | -20.55 |
Consensus MFE | -14.56 |
Energy contribution | -15.12 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.21 |
Mean z-score | -1.75 |
Structure conservation index | 0.71 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12175474 98 + 27905053 CCUUCAAAAAGUUCUGCAAAGCGCAGAAAAACAAGGAACACAGAUUCGUGAGUAGCCGGCAAACAAGUGCCGCCCCCUCUCCCUCACUUCCUAUUCUC ...........((((((.....)))))).....(((((....((...(.(((..(.(((((......))))).)..))).)..))..)))))...... ( -22.70) >DroPse_CAF1 1985 81 + 1 AAUUCAAGAAGUUCUGCAAGACACAAAAGAACAAGGAGCACAGAUUCGUGAGUAGCCGGCAAACAAUGUUCU--------------CUUCCGC---CU ..........(((((............)))))..((..(((......))).....))(((............--------------.....))---). ( -10.93) >DroSec_CAF1 243 97 + 1 UCUUCAAAAAGUUCUGUAAAACGCAGAAAAACAAGGAACACAGAUUCGUGAGUAGCCGGCAAACAAGUGCCGCC-CCUCACCCACACUUCCUAUUCUU ...........((((((.....)))))).....(((((.........(((((..((.((((......)))))).-.)))))......)))))...... ( -23.76) >DroSim_CAF1 243 98 + 1 CCUUCAAAAAGUUCUGCAAAGCGCAGAAAAACAAGGAACACAGAUUCGUGAGUAGCCGGCAAACAAGUGCCGCCCCCUCUCCCUCACUCCUUAUUCUU ...........((((((.....))))))....(((((..((......))(((..(.(((((......))))).)..)))........)))))...... ( -22.50) >DroEre_CAF1 238 95 + 1 CCUUUAAAAAAUUCUGCAAAACGCAGAAAAAUAAGGAACACAGAUUCGUGAGUAGCCGGCAAACAAGUGCCGCCCCUCUGUCCCCACUUCCUC---UU ...........((((((.....)))))).....(((((....(((....(((..((.((((......))))))..))).))).....))))).---.. ( -23.80) >DroYak_CAF1 240 97 + 1 CCUUCAAAAAGUUCUGCAAAACGCAGAAAAAUAAGGAGCACAGAUUCGUGAGUAGCCGGCAAACAAGUGCCGCCCCCCU-UCCCCACUUCCUCUUCUU ...........((((((.....)))))).....((((((((......)))......(((((......))))).......-.......)))))...... ( -19.60) >consensus CCUUCAAAAAGUUCUGCAAAACGCAGAAAAACAAGGAACACAGAUUCGUGAGUAGCCGGCAAACAAGUGCCGCCCCCUC_CCCCCACUUCCUAUUCUU ...........((((((.....)))))).....((((((((......)))......(((((......)))))...............)))))...... (-14.56 = -15.12 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:00 2006