Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,173,152 – 12,173,260 |
Length | 108 |
Max. P | 0.985383 |
Location | 12,173,152 – 12,173,260 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.37 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -15.68 |
Energy contribution | -15.69 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.38 |
Mean z-score | -2.45 |
Structure conservation index | 0.62 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12173152 108 - 27905053 UCC------------GCUACAGAUUCUCGGUGAACUUUGUCAACAGUCCGGACUGCACGGACAACAUCACAUACCACUUCAAGGUGGUGAUUCCCACACAGACGAUUAUCGAGAAUUAUA ...------------......((((((((((((...(((((....(((((.......))))).........(((((((....)))))))...........)))))))))))))))))... ( -35.90) >DroPse_CAF1 88759 120 - 1 UCCUCUCCAUCUCUCUCUACAGAUUCUCGGUGAACUUUGUGAACAGUCCAGUCUGUACAGACAACAUCACAUAUCACUUCAAAGUGGUGAUCCCCACACAGACGAUCAUCGAGAACUACA ....................((.((((((((((.(((((((.........((((....))))..((((((.............)))))).......)))))).).))))))))))))... ( -30.92) >DroGri_CAF1 107173 108 - 1 UCU------------UUUACAGAUUUUCCAUAAAUUUCGUAAACAGUCCCAACUGCACAGACAACAUAACGUAUCAUUUUAAAGUUAGGAUACCGACACAGACAAUCAUCGAGAACUACA (((------------(((((((((((.....)))))).))))...((((.((((.........((.....))..........)))).))))...................))))...... ( -10.41) >DroWil_CAF1 98508 109 - 1 UCC-----------ACCCACAGGUUCUCGGUAAAUUUUGUCAACGAUCCAACCUGCACAGACAACAUCACGUAUCAUUUUAAGGUACUGGUACGCCUACAGACCAUUAUUGAGAACUACA ...-----------.......((((((((((((..(((((...((..(((((((.........((.....)).........))))..)))..))...)))))...))))))))))))... ( -22.67) >DroMoj_CAF1 107674 108 - 1 UCA------------UUUACAGAUUCUCGAUCAAUUUCGUAAACAGUCCCAGCUGCACAGACAACAUAACAUAUCAUUUUAAAGUUAGGGUACCCGCACAGACGAUCGUCGAGAAUUACA ...------------......((((((((((.....((((...((((....))))............................((..((....))..))..))))..))))))))))... ( -20.40) >DroPer_CAF1 86793 120 - 1 UCCUCUCCAUCUCUCUCUACAGAUUCUCGGUGAACUUUGUGAACAGUCCAGUCUGUACAGACAACAUCACAUAUCACUUCAAAGUGGUGAUCCCCACACAGACGAUCAUCGAGAACUACA ....................((.((((((((((.(((((((.........((((....))))..((((((.............)))))).......)))))).).))))))))))))... ( -30.92) >consensus UCC____________UCUACAGAUUCUCGGUGAACUUUGUAAACAGUCCAAACUGCACAGACAACAUCACAUAUCACUUCAAAGUGGUGAUACCCACACAGACGAUCAUCGAGAACUACA ....................((.((((((((((..(((((...(((......))).........((((((.............))))))........)))))...))))))))))))... (-15.68 = -15.69 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:59 2006