Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,161,306 – 12,161,406 |
Length | 100 |
Max. P | 0.975530 |
Location | 12,161,306 – 12,161,406 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 89.59 |
Mean single sequence MFE | -41.93 |
Consensus MFE | -35.93 |
Energy contribution | -36.68 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.10 |
Mean z-score | -2.71 |
Structure conservation index | 0.86 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12161306 100 - 27905053 AAUCGGCCGGGAGGCGUGUACCAUGGGGCACGCGUU-UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUCAAUUUGCAUUUG-------------- ......((.(((.(((((..(....)..))))).))-).))(((((((......)))))))((((.(((...(((((....)))))..))).)))).....-------------- ( -41.70) >DroSec_CAF1 67970 100 - 1 AAUCGGCCAGGAGGCGUGUUCCAUGGGGCACGCGUU-UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUCAAUUUGCAUUUG-------------- ......((..((.((((((((....)))))))).))-..))(((((((......)))))))((((.(((...(((((....)))))..))).)))).....-------------- ( -42.80) >DroSim_CAF1 68386 100 - 1 AAUCGGCCGGGAGGCGUGUUCCAUGGGGCACGCGUU-UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUCAAUUUGCAUUUG-------------- ......((.(((.((((((((....)))))))).))-).))(((((((......)))))))((((.(((...(((((....)))))..))).)))).....-------------- ( -44.30) >DroEre_CAF1 68927 100 - 1 AAUCGGCAGGGAGGCGUGUUCCAUGGGGCACGCGUU-UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUCAAUUUGCAUUUG-------------- .....((((.(((((((((((....))))))(((..-(.(.(((((((......))))))).).)..)))..............)))))...)))).....-------------- ( -42.00) >DroYak_CAF1 80155 100 - 1 AAUCGCCAGGGAGGCGUUUUCCAUGGGGCACGCGUU-UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUUAAUUUGCAUUUG-------------- ....((....(((((((((.....((.((..(((..-(.(.(((((((......))))))).).)..)))..)).))...))))))))).....)).....-------------- ( -37.20) >DroAna_CAF1 68671 115 - 1 AAUCGCCCAGGAGGCGGGCUGGAUGGGGCACGCGUUUUUGGGCGCCGUUUAAUUGCGGCGCGCGAUUUGUACGCGAUUUUAAACGCCUCAAUUUGCAUUUCUCGGCAGUCGUUAG ....(((.(((((....((..(.((((((.(((((..(((.(((((((......))))))).))).....))))).........)))))).)..)).))))).)))......... ( -43.60) >consensus AAUCGGCCGGGAGGCGUGUUCCAUGGGGCACGCGUU_UGGGGCGCCGUUUAAUUGCGGUGCGCGAUUUGCAAGCGUUUUUAAACGCCUCAAUUUGCAUUUG______________ ......((..((.((((((((....)))))))).))...))(((((((......)))))))((((.(((...(((((....)))))..))).))))................... (-35.93 = -36.68 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:53 2006