Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,157,248 – 12,157,343 |
Length | 95 |
Max. P | 0.678218 |
Location | 12,157,248 – 12,157,343 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.89 |
Mean single sequence MFE | -28.02 |
Consensus MFE | -17.99 |
Energy contribution | -19.05 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.13 |
Mean z-score | -2.35 |
Structure conservation index | 0.64 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12157248 95 + 27905053 ACUGACUUGAGGUGAGCAGUUGUUUUCUUGUUUUAACGACUUUACUGCUGCCACGCUGCGUAUGCGCAAUGCACAC-----C-GUCCCCUUAAGAAGUUAA (((..(((((((((.(((((.((....((((....))))....)).))))))))((((((....))))..))....-----.-.....)))))).)))... ( -26.40) >DroPse_CAF1 71257 90 + 1 ACUGGAUUU------GUAGUU--UGUAUUUUUUUUACGACUUUACUGCA---ACGCUGCGUAUGCGCAAUGCCCCCACCCCCAGCCCAUUGGGGAAGAGAC ..(((..((------((((((--((((.......)))))....))))))---).((((((....))))..))..))).((((((....))))))....... ( -24.30) >DroSec_CAF1 63946 95 + 1 ACUGACUUCAGUUGAGCAGUUGUUUUCUCGUUUUUACGACUUUACUGCCGCCACGUUGCGUAUGCGCAAUGCACAC-----C-GCCCCCUUAAGAAGUUAA ..(((((((.(.((.(((((.......((((....))))....))))))).).(((((((....))))))).....-----.-..........))))))). ( -25.60) >DroSim_CAF1 64347 95 + 1 ACUGACUUCAGGUGAGCAGUUGUUUUCUCGUUUUUACGACUUUACUGCCGCCACGUUGCGUAUGCGCAAUGCACAC-----C-GCCCCCUUAAGAAGUUAA ..(((((((.((((.(((((.......((((....))))....))))))))).(((((((....))))))).....-----.-..........))))))). ( -32.50) >DroEre_CAF1 64308 95 + 1 ACUGACUUCAGGUGAGCAGUUGUUUUCUCGUUUUUACGACUUUACUGCAGCCACGUUGCGUAUGCGCAAUGCUCAC-----C-GUCCCCUUUGAAAGUUAA ..(((((((((((((((.(((((....((((....)))).......)))))...((((((....))))))))))))-----)-........)).)))))). ( -29.40) >DroYak_CAF1 76158 95 + 1 ACUGCCUUCAGGUGAGCAGUUGUUUUCUCGUUUUUACGACUUUACUGCAGCCACGUUGCGUAUGCGCAAUGCUCAC-----C-GGCCUCUUUAGAAGUUAA ...(((....(((((((.(((((....((((....)))).......)))))...((((((....))))))))))))-----)-)))............... ( -29.90) >consensus ACUGACUUCAGGUGAGCAGUUGUUUUCUCGUUUUUACGACUUUACUGCAGCCACGUUGCGUAUGCGCAAUGCACAC_____C_GCCCCCUUAAGAAGUUAA ..(((((((......(((((.......((((....))))....))))).....(((((((....)))))))......................))))))). (-17.99 = -19.05 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:52 2006