Locus 4621

Sequence ID 3R_DroMel_CAF1
Location 12,156,997 – 12,157,094
Length 97
Max. P 0.983324
window7595

overview

Window 5

Location 12,156,997 – 12,157,094
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 89.43
Mean single sequence MFE -27.11
Consensus MFE -23.79
Energy contribution -24.23
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -2.54
Structure conservation index 0.88
SVM decision value 1.94
SVM RNA-class probability 0.983324
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12156997 97 + 27905053
UGUCAGCUGUCAGUUUUGAAAGUUGGCAGGCGCUGAACUUGGCAUUUUAAUUGAGUGCAAAAUAAAAAUAAGCUCAG-GGAAAAAGAGAAUGCAGCGG
((((((((.((......)).))))))))..(((((..(((....((((..((((((...............))))))-..)))).)))....))))). ( -25.96)
>DroSec_CAF1 63694 98 + 1
UGUCAGCUGUCAGUUUUGAAAGUUGGCAGGCGCUGAACUUGGCAUUUUAAUUGAGUGCAAAAUAAAAAUAAGCUCAAUGGAAAAAGAGACUGCAGUGC
((((((((.((......)).)))))))).((((((..(((....((((.(((((((...............))))))).))))..)))....)))))) ( -26.86)
>DroSim_CAF1 64096 98 + 1
UGUCAGCUGUCAGUUUUGAAAGUUGGCAGGCGCUGAACUUGGCAUUUUAAUUGAGUGCAAAAUAAAAAUAAGCUCAAUGGAAAAAGAGACUGCAGUGC
((((((((.((......)).)))))))).((((((..(((....((((.(((((((...............))))))).))))..)))....)))))) ( -26.86)
>DroEre_CAF1 64060 94 + 1
UGUCAGCUGUCAGUUUUGAAAGUUGGCAGGCGCUGAACUUGGCAUUUUAAUUGAGUGCAAA---UAAGUAAACUCA-UGGAAAAAGAGACUGCAGUGC
((((((((.((......)).)))))))).((((((.(((((((((((.....))))))...---)))))...(((.-........)))....)))))) ( -27.20)
>DroYak_CAF1 75910 94 + 1
UGUCAGCUGUCAGUUUUGAAAGUUGGCAGGCGCUGAACUUGGCAUUUUAAUUGAGUGCAAA---AAAAUAAACUCA-UGGAAAAAGAGACUGCAGUGC
((((((((.((......)).)))))))).((((((......((((((.....))))))...---........(((.-........)))....)))))) ( -25.90)
>DroAna_CAF1 65289 88 + 1
UGUCAGCUGUCAGUUUUGAAUGUUGGCAGGCGCUGAACUUGGCAUUUUAAUUGAGUGCAUA---G-----AGCUCU--CAAGAAAAUGAUUGCAGCGC
(((((((..((......))..))))))).((((((.......((((((..(((((.((...---.-----.)).))--))).))))))....)))))) ( -29.90)
>consensus
UGUCAGCUGUCAGUUUUGAAAGUUGGCAGGCGCUGAACUUGGCAUUUUAAUUGAGUGCAAA___AAAAUAAGCUCA_UGGAAAAAGAGACUGCAGUGC
((((((((.((......)).)))))))).((((((......((((((.....))))))..............(((..........)))....)))))) (-23.79 = -24.23 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:51 2006