Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,151,950 – 12,152,059 |
Length | 109 |
Max. P | 0.599722 |
Location | 12,151,950 – 12,152,059 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.30 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -18.42 |
Energy contribution | -18.10 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.26 |
Mean z-score | -1.46 |
Structure conservation index | 0.81 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599722 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12151950 109 - 27905053 UGUCAUCCACCCAUUGAGUAUCAUAGAUAACCUGAAA-------GAUUAUUAACACAUUUUAUACAUUUCUUUUGUAAGAAGUCUAAGAAAUUAGAA----ACCUGGAUGGCAAUGCCCA (((((((((............................-------......................((((((....))))))(((((....))))).----...)))))))))....... ( -20.10) >DroSec_CAF1 58580 108 - 1 UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA-------GAUUAUUAGCACACUUUAUACGUUUCUU-UAUAAGAAGUCUAAUAAAUUAGAA----ACCUGGAUGGCAAUACCCA (((((((((...((.((((((....(((((.(.....-------).)))))...)))))).))..(((((((-(((.((....)).))))...))))----)).)))))))))....... ( -23.80) >DroSim_CAF1 58974 108 - 1 UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA-------CAUUAUUAGCACAUUUUAUACGUUUCUU-UAUAAGAAGUCUAAUGGAUUAGAA----ACCUGGAUGGCAAUGCCCA (((((((((.......(((((..(((.....)))..)-------))))(((((.((.(((((((........-))))))).))))))).........----...)))))))))....... ( -23.10) >DroEre_CAF1 58646 112 - 1 UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA-------GAUUAUUGGCACAUUUUAAACGUUUCUU-UAUAAGAAGUCCAAAGAUUUAGUAACCAACCUGGAUGGCGAUGCCCA .((((((((........((((((...((((.(.....-------).))))))))))................-..((..(((((....)))))..)).......))))))))........ ( -20.70) >DroYak_CAF1 70561 115 - 1 UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAAUUAUUAGCAUUAUUGGCACAUUUUAAACGUUUCUC-UAUAAGAAGUCUAAUGAUUUAGGA----ACCUGGAUGGCAAUGCCCA (((((((((........((((((..(((...((((.....)))).)))..)))))).........((((((.-......(((((....)))))))))----)).)))))))))....... ( -25.81) >consensus UGUCAUCCACCCAUUGAGUGUCAUAGAUAACCUGAAA_______GAUUAUUAGCACAUUUUAUACGUUUCUU_UAUAAGAAGUCUAAUGAAUUAGAA____ACCUGGAUGGCAAUGCCCA (((((((((....((.((((((...))))..)).))..........(((((((.((.(((((((.(.....).))))))).)))))))))..............)))))))))....... (-18.42 = -18.10 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:50 2006