Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,147,402 – 12,147,492 |
Length | 90 |
Max. P | 0.977599 |
Location | 12,147,402 – 12,147,492 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.41 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -29.58 |
Energy contribution | -29.58 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.88 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12147402 90 + 27905053 --------CCAUCACGU------GUUUCCGUGGUGUAGUGGUUAUCACAUCCGCCUAACACGCGGAAGGCCCCCGGUUCAAUCCCGGGCGGAAACAUUG--------G-A-------AAU --------(((....((------(((((((.(((.(.(((.....))).(((((.......)))))).)))(((((.......))))))))))))))))--------)-.-------... ( -33.60) >DroVir_CAF1 70070 89 + 1 -----------------------GUUUCCGUGGUGUAGUGGUUAUCACAUCCGCCUAACACGCGGAAGGCCCCCGGUUCAAUCCCGGGCGGAAACAUCA--------UCUAAUCAAGACU -----------------------(((((((.(((.(.(((.....))).(((((.......)))))).)))(((((.......))))))))))))....--------............. ( -29.90) >DroPse_CAF1 61357 91 + 1 --------CUCGAGGAU------GUUUCCGUGGUGUAGCGGUUAUCACAUCCGCCUAACACGCGGAAGGCCCCCGGUUCAAUCCCGGGCGGAAACAUGG--------GGA-------AAU --------((((.(...------.((((((((((...((((.........))))...)).)))))))).(((((((.......))))).))...).)))--------)..-------... ( -32.20) >DroGri_CAF1 71564 114 + 1 UUCUAAGAACUUAAUGU------GUUUCCGUGGUGUAGUGGUUAUCACAUCCGCCUAACACGCGGAAGGCCCCCGGUUCAAUCCCGGGCGGAAACAUUCGGCCCAAUCCUCAUUUGGAGU (((((((..........------..(((((((((...((((.........))))...)).)))))))(((((((((.......))))).(....)....)))).........))))))). ( -36.90) >DroMoj_CAF1 68936 104 + 1 -CCUA--AACUAAAUUUGACCAAGUUUCCGUGGUGUAGUGGUUAUCACAUCCGCCUAACACGCGGAACGCCCCCGGUUCAAUCCCGGGCGGAAACAUAU--------UGUUAUU-----U -....--................(((((((.(((((.(((.....))).(((((.......))))))))))(((((.......))))))))))))....--------.......-----. ( -33.30) >DroAna_CAF1 55648 91 + 1 --------CUCUCAAGA------GUUUCCGUGGUGUAGUGGUUAUCACAUCCGCCUAACACGCGGAAGGCCCCCGGUUCAAUCCCGGGCGGAAACAUUU--------GGG-------UUU --------..((((((.------(((((((.(((.(.(((.....))).(((((.......)))))).)))(((((.......)))))))))))).)))--------)))-------... ( -35.00) >consensus ________CCCUAAUGU______GUUUCCGUGGUGUAGUGGUUAUCACAUCCGCCUAACACGCGGAAGGCCCCCGGUUCAAUCCCGGGCGGAAACAUUG________GGU_______AAU .......................((((((((((((.......)))))).(((((.......)))))..((((..((......)).))))))))))......................... (-29.58 = -29.58 + -0.00)
Location | 12,147,402 – 12,147,492 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.41 |
Mean single sequence MFE | -32.32 |
Consensus MFE | -29.17 |
Energy contribution | -29.03 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.05 |
Mean z-score | -1.34 |
Structure conservation index | 0.90 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.939045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12147402 90 - 27905053 AUU-------U-C--------CAAUGUUUCCGCCCGGGAUUGAACCGGGGGCCUUCCGCGUGUUAGGCGGAUGUGAUAACCACUACACCACGGAAAC------ACGUGAUGG-------- ...-------.-.--------((.(((((((((((((.......)))))((...(((((.......))))).(((.....)))....)).)))))))------)..))....-------- ( -31.40) >DroVir_CAF1 70070 89 - 1 AGUCUUGAUUAGA--------UGAUGUUUCCGCCCGGGAUUGAACCGGGGGCCUUCCGCGUGUUAGGCGGAUGUGAUAACCACUACACCACGGAAAC----------------------- .((((.....)))--------)...((((((((((((.......)))))((...(((((.......))))).(((.....)))....)).)))))))----------------------- ( -30.50) >DroPse_CAF1 61357 91 - 1 AUU-------UCC--------CCAUGUUUCCGCCCGGGAUUGAACCGGGGGCCUUCCGCGUGUUAGGCGGAUGUGAUAACCGCUACACCACGGAAAC------AUCCUCGAG-------- ...-------...--------..((((((((((((((.......)))))........(.((((..(((((.........)))))))))).)))))))------)).......-------- ( -31.90) >DroGri_CAF1 71564 114 - 1 ACUCCAAAUGAGGAUUGGGCCGAAUGUUUCCGCCCGGGAUUGAACCGGGGGCCUUCCGCGUGUUAGGCGGAUGUGAUAACCACUACACCACGGAAAC------ACAUUAAGUUCUUAGAA ........((((((((........(((((((((((((.......)))))((...(((((.......))))).(((.....)))....)).)))))))------).....))))))))... ( -36.22) >DroMoj_CAF1 68936 104 - 1 A-----AAUAACA--------AUAUGUUUCCGCCCGGGAUUGAACCGGGGGCGUUCCGCGUGUUAGGCGGAUGUGAUAACCACUACACCACGGAAACUUGGUCAAAUUUAGUU--UAGG- .-----.......--------....((((((((((((.......)))))((.(((((((.......))))).(((.....))).)).)).)))))))................--....- ( -31.60) >DroAna_CAF1 55648 91 - 1 AAA-------CCC--------AAAUGUUUCCGCCCGGGAUUGAACCGGGGGCCUUCCGCGUGUUAGGCGGAUGUGAUAACCACUACACCACGGAAAC------UCUUGAGAG-------- ...-------..(--------((..((((((((((((.......)))))((...(((((.......))))).(((.....)))....)).)))))))------..)))....-------- ( -32.30) >consensus AUU_______ACC________AAAUGUUUCCGCCCGGGAUUGAACCGGGGGCCUUCCGCGUGUUAGGCGGAUGUGAUAACCACUACACCACGGAAAC______ACAUUAAGG________ .........................((((((((((((.......)))))((...(((((.......))))).(((.....)))....)).)))))))....................... (-29.17 = -29.03 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:49 2006