Locus 4618

Sequence ID 3R_DroMel_CAF1
Location 12,142,322 – 12,142,432
Length 110
Max. P 0.567695
window7591

overview

Window 1

Location 12,142,322 – 12,142,432
Length 110
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 88.11
Mean single sequence MFE -27.78
Consensus MFE -21.34
Energy contribution -22.58
Covariance contribution 1.24
Combinations/Pair 1.04
Mean z-score -1.53
Structure conservation index 0.77
SVM decision value 0.07
SVM RNA-class probability 0.567695
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12142322 110 - 27905053
UCCUUCGU-UU-----UUUCUUCGUUCUACAAAAGCUGGGCUGCAAUUGCGAUGGCAAAUCUGCUACAUUUAGAUUGCGAUUGGAAAGGGAAGAACGAAACAUAAUUGAGCAUGAA
...(((((-((-----((((((.((((..(....)..))))..((((((((((((((....))))........))))))))))...)))))))))))))................. ( -26.70)
>DroSec_CAF1 48703 99 - 1
UCCUU-----------------CGUUCUACUCAAGCUGGCCUGCAAUUGCGAUGGCAAAUCUGCUACAUUUAGAUUGCGAUUGGAAAGGGAAGAACGAAACAUAAUUGAGCAUGAA
...((-----------------((((((.(((..((......))..((.((((.((((.((((.......)))))))).)))).)).))).))))))))................. ( -26.20)
>DroSim_CAF1 49017 99 - 1
UCCUU-----------------CGUUCUACUCAAGCUGGCCUGCAAUUGCGAUGGCAAAUCUGCUACAUUUAGAUUGCGAUUGGAAAGGGAAGAACGAAACAUAAUUGAGCAUGAA
...((-----------------((((((.(((..((......))..((.((((.((((.((((.......)))))))).)))).)).))).))))))))................. ( -26.20)
>DroEre_CAF1 48456 108 - 1
UCCUUCUGUUU--------UUUCUUUCUACUCAAGCUGGCCCGCAAUUGCGAUGGCAAAUCUGCUACAUUUCGAUUGCGAUUGGAAAGGGAAGAACGAAACAUAAUUGAGCAUGAA
....(((((((--------((((.((((.(((...(..(..((((((((.(((((((....)))..)))).)))))))).)..)...))).)))).)))).......))))).)). ( -26.81)
>DroYak_CAF1 60196 116 - 1
UCCUUCUGUUUUUAUUUUUUUUCGUUCUACUCAAGCUGGCCUGCAAUUGUGAUGGCAAAUCUGCAACAUUUCGAUUGCGAUUGGAAAGGGAAGAACGAAACAUAAUUGAGCAUGAA
....(((((((..(((...(((((((((.(((...(..(..((((((((.(((((((....)))..)))).)))))))).)..)...))).)))))))))...))).))))).)). ( -33.00)
>consensus
UCCUUC___UU_________UUCGUUCUACUCAAGCUGGCCUGCAAUUGCGAUGGCAAAUCUGCUACAUUUAGAUUGCGAUUGGAAAGGGAAGAACGAAACAUAAUUGAGCAUGAA
....................((((((((.(((...(..(..(((((((..(((((((....)))..))))..))))))).)..)...))).))))))))................. (-21.34 = -22.58 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:47 2006