Locus 4616

Sequence ID 3R_DroMel_CAF1
Location 12,133,102 – 12,133,205
Length 103
Max. P 0.872073
window7587

overview

Window 7

Location 12,133,102 – 12,133,205
Length 103
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 75.77
Mean single sequence MFE -16.31
Consensus MFE -1.05
Energy contribution -0.91
Covariance contribution -0.14
Combinations/Pair 1.08
Mean z-score -1.77
Structure conservation index 0.06
SVM decision value 0.88
SVM RNA-class probability 0.872073
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12133102 103 - 27905053
UCGCAAAUUUCUGUCUCACUAAAU---CCCUACGAUUUGCAUAUUCAAAGGCCACAACAUGUAAUUAUUAUUUAAAUGUG------AUACUUACUCAACUGCUGCAGGCCAA
..(((((((...............---......))))))).........((((.((.((.((((.((((((......)))------))).)))).....)).))..)))).. ( -17.60)
>DroSec_CAF1 39435 105 - 1
UCGCAAAUUUCUGUCUCACUAAAUUUGCACUACGCUUUGCAUAUUCAAAGGCCCCAACAAGUAA-UAUUAUUUAAAUGUG------AUACUUACUCAGCUGCUGCAGGCCAA
..((((((((..(.....).)))))))).....................((((......(((((-((((((......)))------))).)))))..((....)).)))).. ( -21.60)
>DroSim_CAF1 39188 106 - 1
UCGCAAAUUUCUGUCUCACUAAAUUUGCACUACAAUUUGCAUAUUCAAAGGCCCCAACAAGUAAUUAUUAUUUAAAUGUG------GUACUUACUCAACUGCUGCAGGCCAA
..((((((((..(.....).)))))))).....................((((.((.(((((((.((((((......)))------))).)))))....)).))..)))).. ( -20.40)
>DroEre_CAF1 39522 88 - 1
-----AAU-UCUUUCCCACUAGAU---CCCUACGAUUUGCAC---------------CCAGUAAUUAUUAUUUAAGUGUAAUUAUUAUACUUACUCAACUGCUGCAGGCCAA
-----...-...........((((---(.....)))))((..---------------.(((((.........((((((((.....))))))))......)))))...))... ( -11.16)
>DroYak_CAF1 48484 93 - 1
UCUCAAAU-UCCUUUUCAGUAAAU---CCCUACGAUUUGCAC---------------CCAGUAAUUAUUAUUUAAAUGUAAAUAUAGUACUUACUCAACUGCUGCAGCCCAA
........-.........((((((---(.....)))))))..---------------..(((((.((((((............)))))).))))).....((....)).... ( -10.80)
>consensus
UCGCAAAUUUCUGUCUCACUAAAU___CCCUACGAUUUGCAUAUUCAAAGGCC_CAACAAGUAAUUAUUAUUUAAAUGUG______AUACUUACUCAACUGCUGCAGGCCAA
....................................(((((........(....).....((((.(((..................))).))))........)))))..... ( -1.05 =  -0.91 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:43 2006