Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,131,748 – 12,131,845 |
Length | 97 |
Max. P | 0.518025 |
Location | 12,131,748 – 12,131,845 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 95.05 |
Mean single sequence MFE | -31.96 |
Consensus MFE | -25.96 |
Energy contribution | -26.72 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.03 |
Mean z-score | -1.44 |
Structure conservation index | 0.81 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12131748 97 + 27905053 AGCCAAGAGAGCUGCUUGUUUUCGACCACAAGUGGUCAGAGAGGAGAGCCGGAGCCCGCAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAACCAA ..(((.....(((.(((.(((..(((((....)))))..))).))))))((((.((((((((......))))...))))...)))))))........ ( -32.60) >DroSec_CAF1 38084 97 + 1 AGCCAAGAGAGCUGCUUGUUUUCGACCACAAGUGGUCAGAGAGGAGAGCCGGAGCCCAGAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAACCAA ..(((.....(((.(((.(((..(((((....)))))..))).))))))((((.(((.((..(........)..)))))...)))))))........ ( -31.40) >DroSim_CAF1 37831 97 + 1 AGCCAAGAGAGCUGCUUGUUUUCGACCACAAGUGGUCAGAGAGGAGAGCCGGAGCCCGGAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAACCAA ..(((.....(((.(((.(((..(((((....)))))..))).))))))((((.((((((.((........))))))))...)))))))........ ( -32.60) >DroEre_CAF1 38174 95 + 1 AGCCAAGAGAGCUGCUUGUUUUCGACAACAAGUGGUCAGAGAAGAGAGCCGGAGUCCGGAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAUCC-- ..(((..(((((..((((((......))))))..))(((..((((((.((((...))))..))))))..)))..((....))))).)))......-- ( -29.90) >DroYak_CAF1 47129 97 + 1 AGGCAAGAGAGCUGCUUGCUUACGACCACAAGUGGUCAGAGAGGAGAGCCGGAGUCCGGAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAUCCAA (((((((.......)))))))..(((((....))))).....(((...(((.(((((.((..(........)..)).)))...)).)))...))).. ( -33.30) >consensus AGCCAAGAGAGCUGCUUGUUUUCGACCACAAGUGGUCAGAGAGGAGAGCCGGAGCCCGGAGUCUUUUAGCUGGUUCGGGAGAUCUGUGGAAAACCAA ..(((.....(((.(((.(((..(((((....)))))..))).))))))((((.((((((.((........))))))))...)))))))........ (-25.96 = -26.72 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:41 2006