Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,128,610 – 12,128,702 |
Length | 92 |
Max. P | 0.991500 |
Location | 12,128,610 – 12,128,702 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.64 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -7.94 |
Energy contribution | -8.14 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -2.60 |
Structure conservation index | 0.32 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12128610 92 + 27905053 UUGACUUUUGUUUG------------------------GGAGCCUAAAAAUUAAUAGUUUCAGAGAAAUCCUAAAUUUUCG--CUAGGGGAAAAAUAAAAAGCGAAAAUAUGGAAGUC-- ..((((((..((((------------------------(((..((..((((.....))))...))...))))))(((((((--((...............))))))))))..))))))-- ( -20.76) >DroSec_CAF1 34919 116 + 1 UUGACUUUUGUUUGAGAAUGUUGAGAAUAGAAUAGUCUGGAGACUAAAAAUUAAUAUUUUCAGAGAAAUCCAAAAUUUUCG--CUAGGGGAAAAAUAAAAAGCGAAAAUAUGGAAGUC-- ..(((((((.((((((((((((((........(((((....)))))....)))))))))))))).)))((((..(((((((--((...............))))))))).))))))))-- ( -31.66) >DroSim_CAF1 34667 113 + 1 UUGACUUUUGUUUGAGAAUA---GGACCAACACGACCUGGAGACUAAAAAUUAAUAUUUUCAGAGAAAUCCUAAAUUUUCG--CUAGGGGAAAAAUAAAGAGCGAAAAUAUGGAAGUC-- ..(((((((.((((((((((---((.(......).)).(....)..........)))))))))).)))(((...(((((((--((...............)))))))))..)))))))-- ( -24.26) >DroEre_CAF1 35021 113 + 1 UUGACUUUUAUUUGGGAGUA---UAACCAACGCAA-CUGGAUACUGAAAAUUAAUAUUUUCUGAGAAAUCCUAAAGUUUUACCCUAGGGGGAAAAUGA-AAGCGAAACUAUGGAAGUC-- ..(((((((((((((.....---...))))(((..-..((((...((((((....))))))......))))....(((((.(((....))))))))..-..))).....)))))))))-- ( -26.20) >DroYak_CAF1 39291 113 + 1 UUGACUUUUAUUUGGGUAUA---UAACCAACACAA-CUGGAUACUGAAA--UAAUAUUUUUAGAGAAAUCCUAAAGUUUCGCCCUAGGGGAAAUCUGA-AAGUGAAACUAUGGAAUUAUA .......((((((.(((((.---...(((......-.)))))))).)))--)))((((((((((....(((((..(.....)..)))))....)))))-)))))................ ( -22.10) >consensus UUGACUUUUGUUUGAGAAUA___UAACCAACACAA_CUGGAGACUAAAAAUUAAUAUUUUCAGAGAAAUCCUAAAUUUUCG__CUAGGGGAAAAAUAAAAAGCGAAAAUAUGGAAGUC__ ..(((((((((...........................(((..((.(((((....)))))...))...)))...(((((((.....................)))))))))))))))).. ( -7.94 = -8.14 + 0.20)
Location | 12,128,610 – 12,128,702 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.64 |
Mean single sequence MFE | -19.66 |
Consensus MFE | -8.22 |
Energy contribution | -9.30 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.14 |
Mean z-score | -2.41 |
Structure conservation index | 0.42 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12128610 92 - 27905053 --GACUUCCAUAUUUUCGCUUUUUAUUUUUCCCCUAG--CGAAAAUUUAGGAUUUCUCUGAAACUAUUAAUUUUUAGGCUCC------------------------CAAACAAAAGUCAA --(((((((..(((((((((...............))--)))))))...)))....(((((((........)))))))....------------------------........)))).. ( -17.76) >DroSec_CAF1 34919 116 - 1 --GACUUCCAUAUUUUCGCUUUUUAUUUUUCCCCUAG--CGAAAAUUUUGGAUUUCUCUGAAAAUAUUAAUUUUUAGUCUCCAGACUAUUCUAUUCUCAACAUUCUCAAACAAAAGUCAA --((((((((.(((((((((...............))--)))))))..))))......(((.((((........(((((....)))))...)))).)))...............)))).. ( -21.86) >DroSim_CAF1 34667 113 - 1 --GACUUCCAUAUUUUCGCUCUUUAUUUUUCCCCUAG--CGAAAAUUUAGGAUUUCUCUGAAAAUAUUAAUUUUUAGUCUCCAGGUCGUGUUGGUCC---UAUUCUCAAACAAAAGUCAA --(((((....(((((((((...............))--))))))).(((((.....((((((((....))))))))...((((......)))))))---))...........))))).. ( -22.06) >DroEre_CAF1 35021 113 - 1 --GACUUCCAUAGUUUCGCUU-UCAUUUUCCCCCUAGGGUAAAACUUUAGGAUUUCUCAGAAAAUAUUAAUUUUCAGUAUCCAG-UUGCGUUGGUUA---UACUCCCAAAUAAAAGUCAA --(((((.........(((..-..........(((((((.....)))))))........((((((....)))))).........-..)))((((...---.....))))....))))).. ( -20.50) >DroYak_CAF1 39291 113 - 1 UAUAAUUCCAUAGUUUCACUU-UCAGAUUUCCCCUAGGGCGAAACUUUAGGAUUUCUCUAAAAAUAUUA--UUUCAGUAUCCAG-UUGUGUUGGUUA---UAUACCCAAAUAAAAGUCAA ......(((..((((((.(((-(.((.......)))))).))))))...)))..............(((--(((..((((((((-.....))))...---.))))..))))))....... ( -16.10) >consensus __GACUUCCAUAUUUUCGCUUUUUAUUUUUCCCCUAG__CGAAAAUUUAGGAUUUCUCUGAAAAUAUUAAUUUUUAGUCUCCAG_UUGUGUUGGUCA___UAUUCCCAAACAAAAGUCAA ..(((((((..(((((((.....................)))))))...))).....((((((((....)))))))).....................................)))).. ( -8.22 = -9.30 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:40 2006