Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,121,503 – 12,121,595 |
Length | 92 |
Max. P | 0.500000 |
Location | 12,121,503 – 12,121,595 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 83.11 |
Mean single sequence MFE | -11.02 |
Consensus MFE | -7.43 |
Energy contribution | -7.77 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.67 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12121503 92 + 27905053 UUCACUUUGAAGAGCGUACUUCUGAUAGCUAUACAAUUAGUAAGUACUACCACAAAA------AAAUCCACCAA-----AAACAAAGUUAAACAACGAAGCAU .............(((((((((((((.(.....).))))).))))))..........------...........-----.......(((....)))...)).. ( -11.00) >DroSim_CAF1 27468 91 + 1 UUCACUUUGAAGAGCGUACUUCUGAUAGCUAUACAAUUAGUAAGUACUACCACAAAA------AAAUCCACCAA------AACAAAGUUAAACAACGAAGCAU .............(((((((((((((.(.....).))))).))))))..........------...........------......(((....)))...)).. ( -11.00) >DroEre_CAF1 27127 92 + 1 UUCACUUUGAAGAGCGUACUUCUGAUAGCUAUACAAUUAGUAAGUACUACCACAACA------AAAUCCACCAA-----AUACAAAGUUAAACAACAAAGCAU .............(((((((((((((.(.....).))))).))))))..........------...........-----.......(((....)))...)).. ( -11.00) >DroWil_CAF1 31956 103 + 1 UUCACUUUGAAGACCGUACUACUGAUAGCUAUACAAUUAGUAAGUACAAAAACAACAAUAAACAAAAAAGAAAAACACCAUUCAAAUUUAAACCACUACCAAA .....((((((....(((((((((((.(.....).)))))).)))))......................(........).))))))................. ( -10.60) >DroYak_CAF1 32017 92 + 1 UUCACUUUGAAGAGCGUACUUCUGAUAGCUAUACAAUUAGUAAGUACUACCACAACA------AAAUCCACAAA-----AACCAAAGUUAAACAACGAAGUAU ...((((((......(((((((((((.(.....).))))).))))))..........------...........-----(((....)))......)))))).. ( -13.10) >DroAna_CAF1 23153 91 + 1 UUCACUUUGAAGAGCGUACUACUGAUAGCUAUACAAUUAGUAAGUACAACCACAAAAA-----AAAACCACCAC-----AAACCACUUUAAACACGGCAGA-- ...............(((((((((((.(.....).)))))).)))))...........-----...........-----......................-- ( -9.40) >consensus UUCACUUUGAAGAGCGUACUUCUGAUAGCUAUACAAUUAGUAAGUACUACCACAAAA______AAAUCCACCAA_____AAACAAAGUUAAACAACGAAGCAU ...............(((((((((((.(.....).))))).))))))........................................................ ( -7.43 = -7.77 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:35 2006