Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,742,332 – 1,742,431 |
Length | 99 |
Max. P | 0.636525 |
Location | 1,742,332 – 1,742,431 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 69.25 |
Mean single sequence MFE | -13.56 |
Consensus MFE | -7.79 |
Energy contribution | -9.23 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.31 |
Structure conservation index | 0.57 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1742332 99 + 27905053 UUCCCGCCCAC-CUUUCCACCUC----UCUCAUCCCCAUUUUUCCCUGACAACCCCAACAGGGGUGCAUGCACAUUUUUUGCAAGUGCAGUAAAUGAAUUUUUU ...........-...........----.........(((((....(((((.(((((....)))))...((((.......)))).)).))).)))))........ ( -16.40) >DroSec_CAF1 51396 99 + 1 UUCCCGCCCGC-UUUUCCAUCUC----CCUCAUCCCCAUUUCCCCCCACAAACCCCAACAGGGGUGCAUGCACAUUUUUUGCAAAUGCAGCAAAUGAAUUUUUU .........((-(..........----........................(((((....)))))(((((((.......))))..))))))............. ( -16.60) >DroSim_CAF1 52600 99 + 1 UUCCCGCCCGC-UUUUCCAUCUC----CCUCAUCCCCAUUUCCCCCCACAAACCCCAACAGGGGUGCAUGCACAUUUUUUGCAAAUGCAGCAAAUGAAUUUUUU .........((-(..........----........................(((((....)))))(((((((.......))))..))))))............. ( -16.60) >DroEre_CAF1 50139 88 + 1 UUUCCGCC-GC-UUUUCCACCCC------------UCAUUUCCCC-AGAC-AGCCCAACUCGGCUACAAGAACAUUUUUUGCAAAUGCAGCAAAUGAACUUUUU ........-..-...........------------..........-....-((((......)))).......(((((.((((....)))).)))))........ ( -12.00) >DroYak_CAF1 51877 76 + 1 UUCCCGCC-GC-GCU-----------------------UUUCCCC-CGAC-CCCCCAGCUGG-GUGCAUGAACAUUUUUCGCAAAUGCAGCAAAUGAAUUUUUU .....((.-((-(..-----------------------.......-....-..(((....))-)(((..(((.....))))))..))).))............. ( -10.30) >DroPer_CAF1 46036 92 + 1 GU--UGCCUACACUUUCUACCCCCAUGCCUCACCCUCAC-----CCU---CACCCC-GUU-GACAGUACGAAAAUUUUUUGCAAGUGCUGCAAAUGAAUUUUUU ..--...................................-----...---.....(-(((-..((((((...............))))))..))))........ ( -9.46) >consensus UUCCCGCCCGC_UUUUCCACCUC____CCUCAUCCCCAUUUCCCCCCGACAACCCCAACAGGGGUGCAUGAACAUUUUUUGCAAAUGCAGCAAAUGAAUUUUUU ...................................................(((((....))))).......(((((.((((....)))).)))))........ ( -7.79 = -9.23 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:47 2006