Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,114,841 – 12,114,951 |
Length | 110 |
Max. P | 0.574260 |
Location | 12,114,841 – 12,114,951 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 90.96 |
Mean single sequence MFE | -23.70 |
Consensus MFE | -17.62 |
Energy contribution | -19.02 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.74 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12114841 110 - 27905053 GAAACAGAUAUUGUGUUAUUGUUAUAGGUGGGCGUUACUAUCGACUCAUAAAUAAGUUUUUAUUCUUGUCCCAGUAAGA-----AAAAAAG-AACCCAGGACAAUGACACAGAAAC ..........(((((((((((((...((((((((.......)).))).........(((((.((((((......)))))-----).)))))-.)))...))))))))))))).... ( -26.80) >DroSec_CAF1 20894 110 - 1 GAAACAGAUAUUGUGUUAUUGUUAUAGGUGGGCGUUACUAUCGACUCAUAAAUAAGUUUUUAUUAUUGUCCCAGUAAGA-----AAAAAAG-AACCCAGGACAAUGACACAGAAAC ..........(((((((((((((...((((((((.......)).))).........(((((.((((((...)))))).)-----))))...-.)))...))))))))))))).... ( -25.40) >DroSim_CAF1 20842 113 - 1 GAAACAGAUAUUGUGAUAUUGUUAUAGGUGGGCGUUACUAUCGACUCAUAAAUAAGUUUUUAUUCUUGUCCCAGUAAGAGAA--AAAAAAG-AACCCAGGACAAUGACACAGAAAC ..........(((((.(((((((...((((((((.......)).))).........(((((.((((((......)))))).)--))))...-.)))...))))))).))))).... ( -22.20) >DroEre_CAF1 20452 113 - 1 GAAACAGAUAUUG--UUAUUGUUAUAGGUGGGCGUUACUAUCGACUGAUAAAUAAGAUUUUAUUCUUGUCUUAGUAAGAACAGUAAGAAAU-AACCCAGGACAAUGACACAGAAAC ...........((--((((((((...(((.....(((((.((.(((((...((((((......)))))).)))))..))..))))).....-.)))...))))))))))....... ( -23.60) >DroYak_CAF1 25466 112 - 1 GAAACAGAUGUUG--UUAUUGUUAUAGGUGGGCGUUACUAACGACUCAUAAAUAAGUUUUCAUUCUUGUCCCAGUAAGUACAA--AAAAAUAAACCCAGGACAAUGACACAGAAAC ........(((.(--((((((((...(((((((((.....))).)))....(((((........)))))..............--........)))...))))))))))))..... ( -20.50) >consensus GAAACAGAUAUUGUGUUAUUGUUAUAGGUGGGCGUUACUAUCGACUCAUAAAUAAGUUUUUAUUCUUGUCCCAGUAAGA__A__AAAAAAG_AACCCAGGACAAUGACACAGAAAC ..........(((((((((((((...((((((((.......)).)))....(((((........)))))........................)))...))))))))))))).... (-17.62 = -19.02 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:30 2006