Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,104,991 – 12,105,103 |
Length | 112 |
Max. P | 0.904699 |
Location | 12,104,991 – 12,105,103 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 91.96 |
Mean single sequence MFE | -21.89 |
Consensus MFE | -18.18 |
Energy contribution | -18.78 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.17 |
Mean z-score | -1.70 |
Structure conservation index | 0.83 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12104991 112 + 27905053 CCUUCGCCUCAAGAUUGUCAGUCAUGUAUGUAAUUCUUCUACUUUACACUCUUGUCUACUGAUAAUUAAGCACCAACUGGUUUUUCCAUAUACCAUUGAUUUUGUUCUUGUA .........(((((((((((((((.(..(((((..........)))))..).))...))))))))........(((.((((..........))))))).......))))).. ( -17.50) >DroSec_CAF1 10954 112 + 1 CCUUCGCCGCAAGAUUGUCAGUCAUGUGUGUAAUUCGUCUACUUUACACUCAUGUCUACUGAUAAUUAAGCACCAACUGGUUUUUCCUUGUGCCAUUGAUUUUGUUCUUGUA ........((((((((((((((((((.((((((..........)))))).))))...))))))))....((((.....((.....))..))))............)))))). ( -28.80) >DroSim_CAF1 10891 112 + 1 CCUUCGCCGCAAGAUUGUCAGUCAUGUAUGUAAUUCGUCUACUUUACACUCAUGUCUACUGAUAAUAGGGCACCAACUGGUUUUUCCUUGUGCCGUUGAUUUUGUUCUUGUA ........((((((((((((((((((..(((((..........)))))..))))...))))))))...(((((.....((.....))..)))))...........)))))). ( -29.40) >DroEre_CAF1 10637 112 + 1 CCUUCGCCACGAGAUUGUCAGUCAUUUAUGUAUUACUUCUACUUUACACUCAUGUCUACUGAUAAUUAAGCAGCAACUGGUUUUUCCUUGUGCCAUUGAUUUUGUUCUUGUA ........(((((((((((((((((...((((............))))...)))...))))))))((((...(((...((.....))...)))..))))......)))))). ( -19.70) >DroYak_CAF1 15135 112 + 1 CCUUCGCCUCGAGAUUGUUAGUCAUGUAUAUAUUUCUUCUACUUUACACUCAUGUCCACUGAUAAUUAAGCCCCAACUGGUUUUUCCUUGUGCCAUUGAUUUUGUUCUUGUA .....((..(((((((((((((((((........................))))...))))))))).(((((......)))))...)))).))................... ( -14.06) >consensus CCUUCGCCGCAAGAUUGUCAGUCAUGUAUGUAAUUCUUCUACUUUACACUCAUGUCUACUGAUAAUUAAGCACCAACUGGUUUUUCCUUGUGCCAUUGAUUUUGUUCUUGUA ........((((((((((((((((((..(((((..........)))))..))))...))))))))........(((.((((..........))))))).......)))))). (-18.18 = -18.78 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:25 2006