Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,103,838 – 12,103,953 |
Length | 115 |
Max. P | 0.523700 |
Location | 12,103,838 – 12,103,953 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 91.68 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -18.34 |
Energy contribution | -20.82 |
Covariance contribution | 2.48 |
Combinations/Pair | 1.14 |
Mean z-score | -1.93 |
Structure conservation index | 0.72 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12103838 115 + 27905053 AAGCGGGAAAACAGAAAAACCAAUAUUGCGAAAAUUUCUUCUAAUUAAAUUAGAUUCUCGAUUCCCGUAAAGGAAACGAGGGAAAUGAAAGGUG-GGGAAUGCACGUGGGCGAAAG ..((((.............))....(..((...((((((((((((...))))))...(((.(((((.....(....)..))))).)))......-))))))...))..)))..... ( -23.52) >DroSec_CAF1 9814 116 + 1 AAGCAGGAAAACAGAAAAACCAAUAUUGCGAAAAUUUCUUCUAAUUAAAUUAGAUUCUCGAUUUCCGUAAGGGAAACGAGGGAAAUGAAAGGUGAGGGAGUGCACGUGGGCGAAAG ..((.((............))....(..((...((((((((...((..(((...((((((.(((((....))))).)))))).)))..))...))))))))...))..)))..... ( -26.80) >DroSim_CAF1 9758 115 + 1 AAGCAGGAAAACAGAAAAACCAAUAUUGCGAAAAUUUCUUCUAAUUAAAUUAGAUUCUCGAUUCCCGUAAGGGAAACGAGGGAAAUGAAAGGUG-GGGAGUGCACGUGGGCGAAAG ..((.(.....).......(((....((((....(..((((((((...))))))((((((.(((((....))))).))))))...........)-)..).))))..)))))..... ( -29.00) >DroEre_CAF1 9515 115 + 1 AAACAGGAAAACAGAAAAACCAAUACUGCAAAAAUUUCUUCUAAUUAAAUUAGAUGCUCGAUUCCCGUAAGGGAAAAUUGGGAAAUGUAGGGAC-AGGAGUGUGCGUGGGCGAAAG ...................(((...(((((.........((((((...))))))..((((((((((....))))..))))))...)))))(.((-(....))).).)))....... ( -24.60) >DroYak_CAF1 9599 115 + 1 AAGCAGGAAAACAGAAAAACCAAUAUUGCGAAAAUGUCUUCUAAUUAAAUUAGAUGCUCGAUUCCCGUAAGGGAAAGGAGGGAAAUAAAGGGUG-AGGAGUGCUCGUGGGCGAAAG ..((.((............))....(..(((....(((((((.(((...(((..(.(((..(((((....)))))..))).)...)))..))).-))))).)))))..)))..... ( -23.80) >consensus AAGCAGGAAAACAGAAAAACCAAUAUUGCGAAAAUUUCUUCUAAUUAAAUUAGAUUCUCGAUUCCCGUAAGGGAAACGAGGGAAAUGAAAGGUG_GGGAGUGCACGUGGGCGAAAG ..((.((............))....(..((...((((((((((((...))))))..((((.(((((....))))).))))...............))))))...))..)))..... (-18.34 = -20.82 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:20 2006