Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,739,862 – 1,739,976 |
Length | 114 |
Max. P | 0.924665 |
Location | 1,739,862 – 1,739,976 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 78.06 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -12.80 |
Energy contribution | -13.80 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.21 |
Mean z-score | -2.24 |
Structure conservation index | 0.57 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1739862 114 + 27905053 AAGUUGAAUGGGCCGGGGAA--UGCAUUUUUUCCGGAUGCUGCAGAAAUAUCAAGCAAUAAGUGCAAAG---AAAUGGCAAAAAAAAAAAAAAAACGUCAAAAAGCAGACAGCACAAAU ..((((......((((..((--......))..))))...((((...........(((.....)))....---...((((.................))))....)))).))))...... ( -23.93) >DroPse_CAF1 42347 98 + 1 CGACUGAAUAGGCCAAGGAGCCUUCUUUUUUUUGCGCUUCAGCACAAAAAUCAAGAAA----------AAUAAUAUACAAAA---------AAGUAACCG--AAGCAGACAACGUGAAU ...(((....(((......)))(((((.((((((.((....)).))))))..))))).----------..............---------.........--...)))........... ( -15.30) >DroSec_CAF1 48902 106 + 1 AAGUUGAAUGGGCCGGGGAA--UGCAUUUUUUCCGGAUGCUGCAGAAAUAUCAAGCAAUAAGUGCAAAG---AAAUGGCAAAA--------AAAACGUCGAAAAGCAGACAGCACAAAU ..((((......((((..((--......))..))))...((((...........(((.....)))....---...((((....--------.....))))....)))).))))...... ( -23.90) >DroSim_CAF1 50104 106 + 1 AAGUUGAAUGGGCCGGGGAA--UGCAUUUUUUCCGGAUGCUGCAGAAAUAUCAAGCAAUAAGUGCAAAG---AAAUGGCAAAA--------AAAACGUCGAAAAGCAGACAGCACAAAU ..((((......((((..((--......))..))))...((((...........(((.....)))....---...((((....--------.....))))....)))).))))...... ( -23.90) >DroEre_CAF1 47778 105 + 1 AAGCUGAAUGGGCCGGGGAA--UACAUUUUUUCCGGAUGCUGCAGAAAUAUCAAGCAAUAAGUGCAAAG---AAAUGGUAAA---------AAAAAGUCGAAGAGCAGACAGCAGAAAU ..((((......((((..((--......))..))))...((((.((....))..(((.....)))....---..........---------.............)))).))))...... ( -24.20) >DroYak_CAF1 49373 108 + 1 AAGUUGAAUGGGCCAGGGAA--UGCAUUUUUUCCGGAUGUUGCAGAAACAUCAAGCAAUAAGUGCAAAAAAAAAAUGCUAAA---------AAGAAGUCCAAAAGCAGACAGCACAAAU ..(((...(((((.......--.(((((((((...((((((.....))))))..(((.....)))....)))))))))....---------.....)))))..)))............. ( -23.63) >consensus AAGUUGAAUGGGCCGGGGAA__UGCAUUUUUUCCGGAUGCUGCAGAAAUAUCAAGCAAUAAGUGCAAAG___AAAUGGCAAA_________AAAAAGUCGAAAAGCAGACAGCACAAAU ..((((......((((..((........))..))))...((((.((....))..(((.....))).......................................)))).))))...... (-12.80 = -13.80 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:46 2006