Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,087,103 – 12,087,249 |
Length | 146 |
Max. P | 0.973705 |
Location | 12,087,103 – 12,087,209 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.34 |
Mean single sequence MFE | -28.46 |
Consensus MFE | -23.52 |
Energy contribution | -23.92 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.83 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12087103 106 + 27905053 -------AUACUCACAUAUAGGA-AACACUGCGGACAAGUGAAAUUGGUGGAAGAGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGAAUUC------AAUUUAC -------.............(..-..)............((((.(((((.(....((((((((((..((((...))))..)))).....)))))).).))))).)))------)...... ( -27.90) >DroSec_CAF1 23706 107 + 1 -------AUACUCAUAUAUAGGAAAACACUGCGGACAAGUGAAAUUGGUGGAAGAGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGAAUUC------AAUUUAC -------..............(((..((((.......))))...(((((.(....((((((((((..((((...))))..)))).....)))))).).))))).)))------....... ( -27.10) >DroSim_CAF1 23867 107 + 1 -------AUACUCAUAUAUAGGAAAACACUGCGGACAAGUGAAAUUGGUGGAAGAGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGAAUUC------AAUUUAC -------..............(((..((((.......))))...(((((.(....((((((((((..((((...))))..)))).....)))))).).))))).)))------....... ( -27.10) >DroEre_CAF1 25729 114 + 1 AUACUUCAUACUCAUACAUAGGAAAACACUGCGGACAAGUCAAAUUGGUGGAAGCGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGAAUUC------AAUUUAC .........(((....(.(((.......))).)....))).((((((((((..((((((((((((..((((...))))..)))).....))))))))..)))...))------))))).. ( -29.00) >DroYak_CAF1 26190 113 + 1 -------AUACUCAUACAUAGGAAAACACUGCGGACAAGUCAAAUUGGUGGAAGCGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGACUUCAACACCAAUUCAC -------..(((....(.(((.......))).)....)))..((((((((...((((((((((((..((((...))))..)))).....))))))))((......))..))))))))... ( -31.20) >consensus _______AUACUCAUAUAUAGGAAAACACUGCGGACAAGUGAAAUUGGUGGAAGAGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGAAUUC______AAUUUAC ..........................((((.......))))...(((((.(....((((((((((..((((...))))..)))).....)))))).).)))))................. (-23.52 = -23.92 + 0.40)
Location | 12,087,135 – 12,087,249 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -28.58 |
Consensus MFE | -22.78 |
Energy contribution | -23.18 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.80 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12087135 114 + 27905053 GAAAUUGGUGGAAGAGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGAAUUC------AAUUUACAGUCUACGUCCAAAGCUUUAACAUACGAAAUGCAACGACA (((.(((((.(....((((((((((..((((...))))..)))).....)))))).).))))).)))------..............(((....(((((........))).))...))). ( -27.70) >DroSec_CAF1 23739 114 + 1 GAAAUUGGUGGAAGAGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGAAUUC------AAUUUACAGUCUACGUCCAAAGCUUUAACAUACGAAAUGCAACGACA (((.(((((.(....((((((((((..((((...))))..)))).....)))))).).))))).)))------..............(((....(((((........))).))...))). ( -27.70) >DroSim_CAF1 23900 112 + 1 GAAAUUGGUGGAAGAGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGAAUUC------AAUUUACAGUCUACGUCCAAAGCUUUAA--UACGAAAUGCAACGACA (((.(((((.(....((((((((((..((((...))))..)))).....)))))).).))))).)))------..............(((....(((((..--....))).))...))). ( -27.90) >DroEre_CAF1 25769 114 + 1 CAAAUUGGUGGAAGCGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGAAUUC------AAUUUACAGCCUACGUCCAAAGCUUUAACAUACGAAAUGCAACAACA .((((((((((..((((((((((((..((((...))))..)))).....))))))))..)))...))------)))))................(((((........))).))....... ( -28.70) >DroYak_CAF1 26223 120 + 1 CAAAUUGGUGGAAGCGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGACUUCAACACCAAUUCACAGUCUACGUCCAAAGCUUUAACAUACGAAAUGCAACAACA ..((((((((...((((((((((((..((((...))))..)))).....))))))))((......))..)))))))).................(((((........))).))....... ( -30.90) >consensus GAAAUUGGUGGAAGAGCCAGCGAGAAGUUUAAUAUAAAUCUCUCACAGUGCUGGCGCGACCGAAUUC______AAUUUACAGUCUACGUCCAAAGCUUUAACAUACGAAAUGCAACGACA ....(((((.(....((((((((((..((((...))))..)))).....)))))).).)))))........................(((....(((((........))).))...))). (-22.78 = -23.18 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:08 2006