Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,086,239 – 12,086,358 |
Length | 119 |
Max. P | 0.999633 |
Location | 12,086,239 – 12,086,342 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 76.93 |
Mean single sequence MFE | -29.75 |
Consensus MFE | -20.81 |
Energy contribution | -22.12 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.16 |
Mean z-score | -1.55 |
Structure conservation index | 0.70 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625432 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12086239 103 + 27905053 A---------------UUUUAGUGCUGCCGUUACUUGUAAAAUAUUUCUCUAGGUUCGGGUCUCUGCUACACAAAGCAGUUUACACUGCUUGUCUAGUGGAUGCACCCGAUAAGCUAG- .---------------.......((((((.......................)))(((((((((..(((.((((.(((((....))))))))).)))..)).).))))))..)))...- ( -30.10) >DroSec_CAF1 22895 119 + 1 AUUUUCCCAGCCUGCAUUUUAGUGUGGCCGUUACGUGUAAAAUAUUUCUUUAGGGUCGGGUCUCUGCUGUACAAAGCAGUUUACACUGCUUGUCUAGUGGAUGCACCGGAUAAACUUAC .....(((.(((.((((....)))))))..(((....)))............)))((((((.((..(((.((((.(((((....))))))))).)))..)).)).)))).......... ( -33.50) >DroSim_CAF1 23072 118 + 1 AUUUUCCCAGCCUGUGUUUUAGUGUGGCCGUUACUUGUAAAAUAUUUCUUUAGGUACGGGUCUCUGCUAUACAAAGCAGUUUACACUGCUUGUCUAGUGGAUGCACCGGAUAAACUUG- ..........((.((((.((.(((((((.(..(((((((...((......))..)))))))..).))))))).(((((((....)))))))........)).)))).)).........- ( -31.40) >DroYak_CAF1 25411 107 + 1 AUCUUCCCAAACUGUACUUUAGUGUGACCAUUAC-----------UUCUUUAGGUUCGAUUCCCCGCUACACAAAGCAGUGUACACUGCUUGUCUGGUGGAAGCACCCGAUAAAAAUG- .....................((((((((.....-----------.......)))).......((((((.((((.(((((....))))))))).))))))..))))............- ( -24.00) >consensus AUUUUCCCAGCCUGUAUUUUAGUGUGGCCGUUACUUGUAAAAUAUUUCUUUAGGUUCGGGUCUCUGCUACACAAAGCAGUUUACACUGCUUGUCUAGUGGAUGCACCCGAUAAACUUG_ .................((..((((((((...(((((.............)))))...))))(((((((.((((.(((((....))))))))).))))))).))))..))......... (-20.81 = -22.12 + 1.31)
Location | 12,086,263 – 12,086,358 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.75 |
Mean single sequence MFE | -33.45 |
Consensus MFE | -21.89 |
Energy contribution | -22.70 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.09 |
Mean z-score | -2.80 |
Structure conservation index | 0.65 |
SVM decision value | 3.81 |
SVM RNA-class probability | 0.999633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12086263 95 + 27905053 AAAUAUUUCUCUAGGUUCGGGUCUCUGCUACACAAAGCAGUUUACACUGCUUGUCUAGUGGAUGCACCCGAUAAGCUAG--C----------------------UUGGUGUUCUUAAAA- .((((((...((((.((((((((((..(((.((((.(((((....))))))))).)))..)).).))))))..).))))--.----------------------..)))))).......- ( -32.60) >DroSec_CAF1 22934 119 + 1 AAAUAUUUCUUUAGGGUCGGGUCUCUGCUGUACAAAGCAGUUUACACUGCUUGUCUAGUGGAUGCACCGGAUAAACUUACACUCAUAUAAAGGGUCACACUUUGUUGGGGCUUUUAAAA- ...........((((.((((((.((..(((.((((.(((((....))))))))).)))..)).)).)))).....))))..((((.((((((.......))))))))))..........- ( -32.60) >DroSim_CAF1 23111 117 + 1 AAAUAUUUCUUUAGGUACGGGUCUCUGCUAUACAAAGCAGUUUACACUGCUUGUCUAGUGGAUGCACCGGAUAAACUUG--CUCAUAUAAAGGGUCACACUUUUUAGGUGCUUUUUAAA- ...........(((((.(((((.((..(((.((((.(((((....))))))))).)))..)).)).))).....)))))--......(((((((.(((.((....))))))))))))..- ( -32.40) >DroEre_CAF1 25041 108 + 1 ------UUCUUGAGGUUCGGGUCCCUGCUGCACAAAGCAGUUUACACUGCUUGUGUGGUGGAAGCACCCGAUAAGCUUG--G--GUAUAAAGGGUUACACUUUUUGC-U-UUUUUGAAAU ------..((..((.((((((((.(..(..(((((.(((((....))))))))))..)..)..).))))))..).))..--)--)..(((((((.....))))))).-.-.......... ( -36.20) >consensus AAAUAUUUCUUUAGGUUCGGGUCUCUGCUACACAAAGCAGUUUACACUGCUUGUCUAGUGGAUGCACCCGAUAAACUUG__C__AUAUAAAGGGUCACACUUUUUUGGUGCUUUUAAAA_ ..............((((((((.((..(((.((((.(((((....))))))))).)))..)).)).))))))................................................ (-21.89 = -22.70 + 0.81)
Location | 12,086,263 – 12,086,358 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.75 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -17.31 |
Energy contribution | -18.62 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.05 |
Mean z-score | -1.88 |
Structure conservation index | 0.66 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12086263 95 - 27905053 -UUUUAAGAACACCAA----------------------G--CUAGCUUAUCGGGUGCAUCCACUAGACAAGCAGUGUAAACUGCUUUGUGUAGCAGAGACCCGAACCUAGAGAAAUAUUU -...............----------------------.--((((....((((((...((..(((.(((((((((....))))).)))).)))..)).))))))..)))).......... ( -28.00) >DroSec_CAF1 22934 119 - 1 -UUUUAAAAGCCCCAACAAAGUGUGACCCUUUAUAUGAGUGUAAGUUUAUCCGGUGCAUCCACUAGACAAGCAGUGUAAACUGCUUUGUACAGCAGAGACCCGACCCUAAAGAAAUAUUU -......((((....(((..((((((....))))))...)))..))))...(((.(..((..((..(((((((((....))))).))))..))..))..))))................. ( -21.20) >DroSim_CAF1 23111 117 - 1 -UUUAAAAAGCACCUAAAAAGUGUGACCCUUUAUAUGAG--CAAGUUUAUCCGGUGCAUCCACUAGACAAGCAGUGUAAACUGCUUUGUAUAGCAGAGACCCGUACCUAAAGAAAUAUUU -........((((.......))))....(((((.(((((--....)))))..(((((.((..(((.(((((((((....))))).)))).)))..)).....))))))))))........ ( -23.40) >DroEre_CAF1 25041 108 - 1 AUUUCAAAAA-A-GCAAAAAGUGUAACCCUUUAUAC--C--CAAGCUUAUCGGGUGCUUCCACCACACAAGCAGUGUAAACUGCUUUGUGCAGCAGGGACCCGAACCUCAAGAA------ ..(((....(-(-((.....((((((....))))))--.--...)))).((((((.(((.(..((((.(((((((....)))))))))))..).))).)))))).......)))------ ( -32.90) >consensus _UUUUAAAAACACCAAAAAAGUGUGACCCUUUAUAU__G__CAAGCUUAUCCGGUGCAUCCACUAGACAAGCAGUGUAAACUGCUUUGUACAGCAGAGACCCGAACCUAAAGAAAUAUUU .................................................((((((.(.((..(((.(((((((((....))))).)))).)))..)))))))))................ (-17.31 = -18.62 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:07 2006