Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,084,855 – 12,084,975 |
Length | 120 |
Max. P | 0.859593 |
Location | 12,084,855 – 12,084,975 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -53.74 |
Consensus MFE | -47.68 |
Energy contribution | -47.68 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.05 |
Mean z-score | -1.43 |
Structure conservation index | 0.89 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12084855 120 - 27905053 CCGAGGAGAUGGUCGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUUCCGCAGGAACUGCUACUGCCGCCGCUGGCUUGUACGGUGGUGAAGCUUCCACUGAAUGCCAGCGUGGACC ..........((((.((..((((((....((((((((.((((((....))))))....)))))))).))))))((((((...(.((((((........)))))))..)))))))).)))) ( -58.00) >DroSec_CAF1 21546 120 - 1 CCGAGGAGAUGGUGGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUUCCGCAGGAACUGCUACUGCCGCCACUCGCUUGGACGGUGGUGAAGCUCCCACUGAAUGCCAGCGUGGACC ((((((((.((((((.(((((..((...(((((.((..(.....)..)).)))))...))..)).)))))))))))).))))).((((((.(.....)))))))....((.....))... ( -54.00) >DroSim_CAF1 21734 120 - 1 CCGAGGAGAUGGUGGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUUCCGCAGGAACUGCUACUGCCGCCACUCGCUUGGACGGUGGUGAAGCUCCCACUGAAUGCCAGCGUGGACC ((((((((.((((((.(((((..((...(((((.((..(.....)..)).)))))...))..)).)))))))))))).))))).((((((.(.....)))))))....((.....))... ( -54.00) >DroEre_CAF1 23637 120 - 1 CCGAGGAAAUGGUGGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUUCCGCAGGAACUGCUACUGCCGCCGCUCGCCUGCACGGUGGUGAAGCUCCCGCUGAAUGCCAACGUGGACC (((.(....(((((..(((((..((....(((((((..((((((((((....))))...)).))))..)))))))(((((........))))).))..)).)))..))))).).)))... ( -50.00) >DroYak_CAF1 24019 120 - 1 CCGAGGAAAUGGUGGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUCCCGCAGGAACUGCUACUGCCGCCGCUCGCUUGCACGGUGGUGAAGCUCCCGCUGAAUGCCAGCGUGGAUC ..(((....((((((.(((((..((...(((((.((..(.....)..)).)))))...))..)).))))))))))))((((.(((....)))))))((((((((.....))))).))).. ( -52.70) >consensus CCGAGGAGAUGGUGGACAGGGUGGUGAAUGUGGCGGUGGUGGAGCUGCUUCCGCAGGAACUGCUACUGCCGCCGCUCGCUUGCACGGUGGUGAAGCUCCCACUGAAUGCCAGCGUGGACC (((..(...(((((..(((((..((....(((((((..((((((((((....))))...)).))))..)))))))(((((........))))).))..)).)))..))))).).)))... (-47.68 = -47.68 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:59 2006