Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,084,135 – 12,084,255 |
Length | 120 |
Max. P | 0.601831 |
Location | 12,084,135 – 12,084,255 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.50 |
Mean single sequence MFE | -51.18 |
Consensus MFE | -49.24 |
Energy contribution | -47.68 |
Covariance contribution | -1.56 |
Combinations/Pair | 1.21 |
Mean z-score | -1.06 |
Structure conservation index | 0.96 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12084135 120 - 27905053 CCGCUGCCGCGCCCCUGUAGGCGGGUUGGCUGUCCAGACGCUCGUGGUAGCUAUGCGGCUGCGAAGGCUGCUGUUGCUGCUGGUGUUGGGGCUGGAAACUGAGUUGCUGGUAGUGAUCCA .((((((((((((((....(((((.....)))))..((((((.(..(((((...((((((.....)))))).)))))..).))))))))))).(....)......)).)))))))..... ( -56.20) >DroSec_CAF1 20826 120 - 1 CCGCUGCCACGCCCCUAUAGGCGGGUUGGCUGUCCAAACGCUCGUGGUAGCCAUGCGGUUGCGAAGGCUGCUGUUGCUGCUGGUGUUGGGGCUGGAAACUUAGUUGCUGGUAGUGAUCCA .((((((((((((((....(((((.....)))))..((((((...((((((...(((((.((....)).))))).))))))))))))))))).(....)......).))))))))..... ( -51.60) >DroSim_CAF1 21014 120 - 1 CCGCUGCCACGCCCCUAUAGGCGGGUUGGCUGUCCAAACGCUCGUGGUAGCCAUGCGGUUGCGAAGGCUGCUGUUGCUGCUGGUGUUGGGGCUGGAAACUUAGUUGCUGGUAGUGAUCCA .((((((((((((((....(((((.....)))))..((((((...((((((...(((((.((....)).))))).))))))))))))))))).(....)......).))))))))..... ( -51.60) >DroEre_CAF1 22917 120 - 1 CCGCUGGCACGCCCCUGUAGGCGGGCUGGCUCUCCAGACGCUCGUGGUAGCCAUGUGGUUGCGAAGGCUGCUGUUGUUGCUGGUGCUGGGGCUGGAAACUAAGUUGCUGGUAGUGAUCCA ..((..((.((((......)))).))..)).((((((.((((...((((((...(..((.((....)).))..).))))))))))))))))..(((.((((.........))))..))). ( -46.60) >DroYak_CAF1 23302 120 - 1 CCGCUGCCACGCCCCUGUAGGCGGGCUGGCUCUCCAGACGCUCGUGGUAGCCAUGUGGUUGCGAAGGCUGCUGUUGUUGCUGGUGCUGGGGCUGGAAACUGAGUUGCUGGUAGUGAUCCA .(((((((.((((......))))(((.((((((((((.(.((.(((.((((...(..((.((....)).))..)....)))).))).)).))))))....)))))))))))))))..... ( -49.90) >consensus CCGCUGCCACGCCCCUGUAGGCGGGUUGGCUGUCCAGACGCUCGUGGUAGCCAUGCGGUUGCGAAGGCUGCUGUUGCUGCUGGUGUUGGGGCUGGAAACUGAGUUGCUGGUAGUGAUCCA .((((((((((((((.(((((((..((((....)))).))))...((((((...(((((.((....)).))))).))))))..))).))))).(....)......).))))))))..... (-49.24 = -47.68 + -1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:57 2006