Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,083,775 – 12,083,935 |
Length | 160 |
Max. P | 0.999647 |
Location | 12,083,775 – 12,083,895 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.17 |
Mean single sequence MFE | -46.86 |
Consensus MFE | -43.26 |
Energy contribution | -43.74 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.05 |
Mean z-score | -2.64 |
Structure conservation index | 0.92 |
SVM decision value | 3.83 |
SVM RNA-class probability | 0.999647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12083775 120 - 27905053 GCUUCAGCGUAUUGCAAAUGAGCACCGAGCGGUACAGCGACUGCUCAGAAACCUGCCGGAAACGGGAGAGUUUGAACAUGGACAGAUUGCGUAUCUUCAGGCGCGUGUCCUUGUAGCAAC ((....))...((((...........(((((((......)))))))..((((((.(((....))).)).))))..(((.(((((...(((((........)))))))))).))).)))). ( -42.50) >DroSec_CAF1 20472 120 - 1 GCUUCAGCGUAUUGCAAAUGAGCACCGAGCGGUACAGCGACUGCUCGGAAACCUGCCGGAAACGGGAGAGUUUGAACAUGGACAGAUUGCGUAUCUUCAGGCGCGUGUCCUUGUAGCAAC ((....))...((((.........(((((((((......)))))))))((((((.(((....))).)).))))..(((.(((((...(((((........)))))))))).))).)))). ( -47.80) >DroSim_CAF1 20660 120 - 1 GCUUCAGCGUAUUGCAAAUGAGCACCGAGCGGUACAGCGACUGCUCGGAAACCUGCCGGAAACGGGAGAGCUUGAACAUGGACAGAUUGCGUAUCUUCAGGCGCGUGUCCUUGUAGCAAC ((....))...((((....((((.(((((((((......)))))))))....((.(((....))).)).))))..(((.(((((...(((((........)))))))))).))).)))). ( -50.00) >DroEre_CAF1 22566 120 - 1 GUUUCAGCGUGUUGCAAAUGAGCACCGAGCGGUACAGCGACUGCUCGGAAACCUGCCGGAAACGGGAGAGUUUGAACAUGGACAGAUUGCGUAUCUUCAGGCGCGUGUCCUUAUAGCAAC ......(((((((.(((((.....(((((((((......)))))))))....((.(((....))).)).))))))))))(((((...(((((........)))))))))).....))... ( -47.30) >DroYak_CAF1 22951 120 - 1 GCUUCAGCGUGUUACAAAUGAGCACCGAGCGGUAUAGCGACUGCUCGGAAACCUGCCGGAAACGGGACAGUUUGAACAUGGACAGAUUGCGUAUCUUCAGGCGCGUGUCCUUGUAGCAAC (((.(((.(((((.(((((...(.(((((((((......))))))))).......(((....))))...))))))))))(((((...(((((........))))))))))))).)))... ( -46.70) >consensus GCUUCAGCGUAUUGCAAAUGAGCACCGAGCGGUACAGCGACUGCUCGGAAACCUGCCGGAAACGGGAGAGUUUGAACAUGGACAGAUUGCGUAUCUUCAGGCGCGUGUCCUUGUAGCAAC ((....))...((((....((((.(((((((((......)))))))))....((.(((....))).)).))))..(((.(((((...(((((........)))))))))).))).)))). (-43.26 = -43.74 + 0.48)
Location | 12,083,815 – 12,083,935 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -45.22 |
Consensus MFE | -42.94 |
Energy contribution | -43.54 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.06 |
Mean z-score | -1.97 |
Structure conservation index | 0.95 |
SVM decision value | 3.06 |
SVM RNA-class probability | 0.998299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12083815 120 - 27905053 UGCAGCUCCUUGGCCUCUGCUUCGAUCUCCCGAUCAAUGCGCUUCAGCGUAUUGCAAAUGAGCACCGAGCGGUACAGCGACUGCUCAGAAACCUGCCGGAAACGGGAGAGUUUGAACAUG ....((((....((.........((((....))))(((((((....)))))))))....))))...(((((((......)))))))..((((((.(((....))).)).))))....... ( -43.30) >DroSec_CAF1 20512 120 - 1 UGCAGCUCCUUGGCCUCUGCUUCGAUCUCACGAUCAAUGCGCUUCAGCGUAUUGCAAAUGAGCACCGAGCGGUACAGCGACUGCUCGGAAACCUGCCGGAAACGGGAGAGUUUGAACAUG ....((((....((.........((((....))))(((((((....)))))))))....)))).(((((((((......)))))))))((((((.(((....))).)).))))....... ( -48.60) >DroSim_CAF1 20700 120 - 1 UGCAGCUCCUUGGCCUCUGCUUCGAUCUCACGAUCUAUGCGCUUCAGCGUAUUGCAAAUGAGCACCGAGCGGUACAGCGACUGCUCGGAAACCUGCCGGAAACGGGAGAGCUUGAACAUG .((.((((....((.........((((....)))).((((((....)))))).))....)))).(((((((((......)))))))))....((.(((....))).)).))......... ( -45.30) >DroEre_CAF1 22606 120 - 1 UGCAGCUCCUUGGCCUCUGCUUCGAUCUCCCGAUCAAUGCGUUUCAGCGUGUUGCAAAUGAGCACCGAGCGGUACAGCGACUGCUCGGAAACCUGCCGGAAACGGGAGAGUUUGAACAUG ....((((....((.........((((....))))(((((((....)))))))))....)))).(((((((((......)))))))))((((((.(((....))).)).))))....... ( -45.60) >DroYak_CAF1 22991 120 - 1 UGCAGCUCCUUGGCCUCGGCUUCGAUCUCCCGAUCAAUGCGCUUCAGCGUGUUACAAAUGAGCACCGAGCGGUAUAGCGACUGCUCGGAAACCUGCCGGAAACGGGACAGUUUGAACAUG ....((((.(((((....))...((((....))))(((((((....))))))).)))..)))).(((((((((......)))))))))((((.(.(((....))).)..))))....... ( -43.30) >consensus UGCAGCUCCUUGGCCUCUGCUUCGAUCUCCCGAUCAAUGCGCUUCAGCGUAUUGCAAAUGAGCACCGAGCGGUACAGCGACUGCUCGGAAACCUGCCGGAAACGGGAGAGUUUGAACAUG ....((((....((.........((((....))))(((((((....)))))))))....)))).(((((((((......)))))))))((((((.(((....))).)).))))....... (-42.94 = -43.54 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:56 2006