Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,082,621 – 12,082,735 |
Length | 114 |
Max. P | 0.786618 |
Location | 12,082,621 – 12,082,735 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 97.81 |
Mean single sequence MFE | -41.95 |
Consensus MFE | -40.76 |
Energy contribution | -41.45 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.05 |
Mean z-score | -1.85 |
Structure conservation index | 0.97 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12082621 114 - 27905053 AAAACAAUGUGGUUGUUGUUGGACUCAACAGCUGGCUCCGAUGGCGAUUGCUGUUGCUGCUGCUGCUCCUCGAGCGACUCCAGGUAGUUGUUGUUGCUGAUGGCCCACUUGUUG ..(((((.((((..((..(..(...(((((((((....(((((((....)))))))(((..(.(((((...))))).)..))).)))))))))...)..)..))))))))))). ( -40.80) >DroSec_CAF1 19318 114 - 1 AAAACAAUGUGGUUGUUGUUGGACUCAACAGCUGGCUCCGAUGGCGAUUGCUGCUGCUGUUGCUGCUCCUCGAGCGACUCCAGGUAGUUGUUGUUGCUGAUGGCCCACUUGUUG ..(((((.((((..((..(..(...(((((((((.((.....((((((.((....)).))))))((((...))))......)).)))))))))...)..)..))))))))))). ( -42.50) >DroSim_CAF1 19506 114 - 1 AAAACAAUGUGGUUGUUGUUGGACUCAACAGCUGGCUCCGAUGGCGAUUGCUGCUGCUGUUGCUGCUCCUCGAGCGACUCCAGGUAGUUGUUGUUGCUGAUGGCCCACUUGUUG ..(((((.((((..((..(..(...(((((((((.((.....((((((.((....)).))))))((((...))))......)).)))))))))...)..)..))))))))))). ( -42.50) >DroEre_CAF1 21412 114 - 1 AAACCAAUGUGGUUGUUGUUGGACUCAACAGCUGGCUCCGAUGGCGGUUGCUGCUGCUGUUGCUGCUCCUCGAGCGACUCCAGGUAGUUGUUGUUGUUGAUGGCCCACUUGUUG ....(((.((((..((..(..(...(((((((((((..((((((((((....))))))))))..)).(((.(((...))).))))))))))))...)..)..)))))))))... ( -42.00) >consensus AAAACAAUGUGGUUGUUGUUGGACUCAACAGCUGGCUCCGAUGGCGAUUGCUGCUGCUGUUGCUGCUCCUCGAGCGACUCCAGGUAGUUGUUGUUGCUGAUGGCCCACUUGUUG ..(((((.((((..((..(..(...(((((((((((..((((((((((....))))))))))..)).(((.(((...))).))))))))))))...)..)..))))))))))). (-40.76 = -41.45 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:51 2006