Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,736,367 – 1,736,588 |
Length | 221 |
Max. P | 0.997975 |
Location | 1,736,367 – 1,736,459 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.67 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -24.98 |
Energy contribution | -25.15 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.82 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1736367 92 + 27905053 -------------UCGUUC-----CACUCG-------UUCGCAC---UGUGUACAUUUGACCCGAAGUGCAUUGGUCAUCACGUGUGGCCAUGUGUCUGCAUUUGAGUGCACUUUGGUCA -------------..((..-----(((...-------.......---.))).))...(((((.((((((((((((((((.....))))))((((....))))...))))))))))))))) ( -28.40) >DroVir_CAF1 52916 102 + 1 -------------CCAGGU-----GGGUGGUUGGUCCCUUGCACAUUUGAGAACAUUUGACCUGAAGUGCAUUGGUCAUCACGUGUGGCCAUGAGUCUGCAUUUGAGUGCACUUUGGUCA -------------....(.-----.((.((.....))))..)...............(((((.((((((((((((((((.....))))))(((......)))...))))))))))))))) ( -31.70) >DroEre_CAF1 44334 92 + 1 -------------UCGUUC-----CACUCG-------UUUGCAC---UGUGUACAUUUGACCCGAAGUGCAUUGGUCAUCACGUGUGGCCAUGUGUCUGCAUUUGAGUGCACUUUGGUCA -------------..((..-----(((...-------.......---.))).))...(((((.((((((((((((((((.....))))))((((....))))...))))))))))))))) ( -28.40) >DroWil_CAF1 40404 106 + 1 AGCCUCCUUACUGCUCUUA-----CAGUCU-------CUCGUAUG--UUUGCACAUUUGACCCGAAGUGCAUUGGUCAUCACGUGUGGCCAUGUGUCUGCAUUUGAGUGCACUUUGGUGA .........((((......-----))))..-------.(((.(((--(....)))).)))(((((((((((((((((((.....))))))((((....))))...)))))))))))).). ( -29.50) >DroMoj_CAF1 48680 102 + 1 -------------GCAGCU-----GGGUGGCUGGUGCCUUGCACAUUUAAGAACAUUUGACCUGAAGUGCAUUGGUCAUCACGUGUGGCCAUGAGUCUGCAUUUGAGUGCACUUUGGUCA -------------.(((((-----....)))))((((...)))).............(((((.((((((((((((((((.....))))))(((......)))...))))))))))))))) ( -35.30) >DroAna_CAF1 41251 97 + 1 -------------ACGUUCUCGUCGACUCG-------UUCGCAC---UGUGCACAUUUGACCCGAAGUGCAUUGGUCAUCACGUGUGGCCAUGUGUCUGCAUUUGAGUGCACUUUGGUCA -------------........(((((...(-------(.(((..---.))).))..)))))((((((((((((((((((.....))))))((((....))))...))))))))))))... ( -30.00) >consensus _____________CCGUUC_____CACUCG_______CUCGCAC___UGUGAACAUUUGACCCGAAGUGCAUUGGUCAUCACGUGUGGCCAUGUGUCUGCAUUUGAGUGCACUUUGGUCA .........................................................(((((.((((((((((((((((.....))))))(((......)))...))))))))))))))) (-24.98 = -25.15 + 0.17)
Location | 1,736,367 – 1,736,459 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.67 |
Mean single sequence MFE | -23.74 |
Consensus MFE | -19.30 |
Energy contribution | -19.47 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.12 |
Mean z-score | -0.75 |
Structure conservation index | 0.81 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1736367 92 - 27905053 UGACCAAAGUGCACUCAAAUGCAGACACAUGGCCACACGUGAUGACCAAUGCACUUCGGGUCAAAUGUACACA---GUGCGAA-------CGAGUG-----GAACGA------------- (((((.(((((((........((..(((.((....)).))).)).....)))))))..)))))..(((.(((.---((....)-------)..)))-----..))).------------- ( -22.92) >DroVir_CAF1 52916 102 - 1 UGACCAAAGUGCACUCAAAUGCAGACUCAUGGCCACACGUGAUGACCAAUGCACUUCAGGUCAAAUGUUCUCAAAUGUGCAAGGGACCAACCACCC-----ACCUGG------------- (((((.((((((((((....).))..(((((......))))).......)))))))..)))))..(((.(......).))).(((........)))-----......------------- ( -23.60) >DroEre_CAF1 44334 92 - 1 UGACCAAAGUGCACUCAAAUGCAGACACAUGGCCACACGUGAUGACCAAUGCACUUCGGGUCAAAUGUACACA---GUGCAAA-------CGAGUG-----GAACGA------------- (((((.(((((((........((..(((.((....)).))).)).....)))))))..)))))..(((.(((.---((....)-------)..)))-----..))).------------- ( -22.92) >DroWil_CAF1 40404 106 - 1 UCACCAAAGUGCACUCAAAUGCAGACACAUGGCCACACGUGAUGACCAAUGCACUUCGGGUCAAAUGUGCAAA--CAUACGAG-------AGACUG-----UAAGAGCAGUAAGGAGGCU ...((.(((((((........((..(((.((....)).))).)).....))))))).))(((..((((....)--))).....-------..((((-----(....))))).....))). ( -23.92) >DroMoj_CAF1 48680 102 - 1 UGACCAAAGUGCACUCAAAUGCAGACUCAUGGCCACACGUGAUGACCAAUGCACUUCAGGUCAAAUGUUCUUAAAUGUGCAAGGCACCAGCCACCC-----AGCUGC------------- (((((.((((((((((....).))..(((((......))))).......)))))))..))))).............((((...))))((((.....-----.)))).------------- ( -25.60) >DroAna_CAF1 41251 97 - 1 UGACCAAAGUGCACUCAAAUGCAGACACAUGGCCACACGUGAUGACCAAUGCACUUCGGGUCAAAUGUGCACA---GUGCGAA-------CGAGUCGACGAGAACGU------------- .(((.....((((((....((((.((((.((....)).))).(((((...........)))))..).)))).)---)))))..-------...)))...........------------- ( -23.50) >consensus UGACCAAAGUGCACUCAAAUGCAGACACAUGGCCACACGUGAUGACCAAUGCACUUCGGGUCAAAUGUACACA___GUGCAAA_______CGACUC_____GAACGA_____________ (((((.((((((((((....).))...((((......))))........)))))))..)))))..(((((......)))))....................................... (-19.30 = -19.47 + 0.17)
Location | 1,736,459 – 1,736,558 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -34.98 |
Consensus MFE | -29.85 |
Energy contribution | -29.80 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.17 |
Mean z-score | -1.49 |
Structure conservation index | 0.85 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535157 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1736459 99 + 27905053 GCAAUUAUUUUACGUUGAGGUCGCAUUAGAGGUGUGCGCCCUCGCUGCCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGAUUGAUG .(((((......((.(((((.(((((.......))))).))))).))............(((((.(((((.(....)))))).)))))...)))))... ( -37.90) >DroPse_CAF1 39022 97 + 1 GCAAUUAUUUUACGUUGAGGUCGCAUUAGAGGUGUGCGCUCUCGCUGCCAACAAAGUUGCCUUAGCCACGACGUAUG--UGAGCGAGGGUUGACUGACG ............((((..((((((((.......))))(((((((((..((((...((.((....)).))...)).))--..))))))))).)))))))) ( -28.20) >DroSim_CAF1 46795 99 + 1 GCAAUUAUUUUACGUUGAGGUCGCAUUAGAGGUGUGCGCCCUCGCUACCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGAUUGAUG .(((((..........((((.(((((.......))))).))))................(((((.(((((.(....)))))).)))))...)))))... ( -37.60) >DroEre_CAF1 44426 99 + 1 GCAAUUAUUUUACGUUGAGGUCGCAUUAGAGGUGUGCGCCCUCGCUGCCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGACUGAUU ............((.(((((.(((((.......))))).))))).)).......((((((((((.(((((.(....)))))).)))))..))))).... ( -38.50) >DroYak_CAF1 45653 99 + 1 GCAAUUAUUUUACGUCGAGGUCGCAUUAGAGGUGUGCGCCCUCGCUGCCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGAUUGAUU .(((((......((.(((((.(((((.......))))).))))).))............(((((.(((((.(....)))))).)))))...)))))... ( -39.50) >DroPer_CAF1 39556 97 + 1 GCAAUUAUUUUACGUUGAGGUCGCAUUAGAGGUGUGCGCUCUCGCUGCCAACAAAGUUGCCUUAGCCACGACGUAUG--UGAGCGAGGGUUGACUGACG ............((((..((((((((.......))))(((((((((..((((...((.((....)).))...)).))--..))))))))).)))))))) ( -28.20) >consensus GCAAUUAUUUUACGUUGAGGUCGCAUUAGAGGUGUGCGCCCUCGCUGCCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGACUGAUG ............((((((((.(((((.......))))).))))...........(((((((((.((((((.(....))))).)).)))).))))))))) (-29.85 = -29.80 + -0.05)
Location | 1,736,497 – 1,736,588 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 86.03 |
Mean single sequence MFE | -37.92 |
Consensus MFE | -30.32 |
Energy contribution | -30.72 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -3.25 |
Structure conservation index | 0.80 |
SVM decision value | 2.97 |
SVM RNA-class probability | 0.997975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1736497 91 + 27905053 CCCUCGCUGCCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGAUUGAUG------GUU-CGAUGAAUGACCAUUGACGAAAUGAUA (((((((((((((..........)))))((((.(....)))))))))))))(((.(..(((------(((-........))))))..))))....... ( -39.10) >DroSec_CAF1 45666 91 + 1 CCCUCGCUGCCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGAUUGAUG------GUU-CGAUGGAUGACCGUUGACGAAUAGAUA (((((((((((((..........)))))((((.(....)))))))))))))(((.(..(((------(((-........))))))..))))....... ( -38.70) >DroSim_CAF1 46833 91 + 1 CCCUCGCUACCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGAUUGAUG------GUU-CGAUGGAUGACCAUUGACGCAAAGAUA .....((.((((.(((.....(((((.(((((.(....)))))).))))).....))).))------))(-((((((....))))))).))....... ( -35.90) >DroEre_CAF1 44464 98 + 1 CCCUCGCUGCCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGACUGAUUCGAAUGGCACAAAUGGCUGUCCAUUGACGAGCAGAUA (((((((((((((..........)))))((((.(....)))))))))))))....(((.(((((((((.(((......))))))))..)))))))... ( -40.10) >DroYak_CAF1 45691 98 + 1 CCCUCGCUGCCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGAUUGAUUAGAACGCGAAGAAUGGAUGUCCAUUGUCGAAAAGACA (((((((((((((..........)))))((((.(....)))))))))))))................(((..(((((....))))).)))........ ( -35.80) >consensus CCCUCGCUGCCAACAAAGUUGCCUUGGCCAGGACGAAAGCCUGGGCGAGGGUCGAUUGAUG______GUU_CGAUGGAUGACCAUUGACGAAAAGAUA (((((((((((((..........)))))((((.(....)))))))))))))....................((((((....))))))........... (-30.32 = -30.72 + 0.40)
Location | 1,736,497 – 1,736,588 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 86.03 |
Mean single sequence MFE | -31.22 |
Consensus MFE | -26.62 |
Energy contribution | -26.50 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.97 |
Structure conservation index | 0.85 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1736497 91 - 27905053 UAUCAUUUCGUCAAUGGUCAUUCAUCG-AAC------CAUCAAUCGACCCUCGCCCAGGCUUUCGUCCUGGCCAAGGCAACUUUGUUGGCAGCGAGGG .......(((...((((((.......)-.))------)))....)))(((((((.(((((....).))))((((((....))....)))).))))))) ( -30.80) >DroSec_CAF1 45666 91 - 1 UAUCUAUUCGUCAACGGUCAUCCAUCG-AAC------CAUCAAUCGACCCUCGCCCAGGCUUUCGUCCUGGCCAAGGCAACUUUGUUGGCAGCGAGGG ...............((....)).(((-(..------......))))(((((((.(((((....).))))((((((....))....)))).))))))) ( -29.00) >DroSim_CAF1 46833 91 - 1 UAUCUUUGCGUCAAUGGUCAUCCAUCG-AAC------CAUCAAUCGACCCUCGCCCAGGCUUUCGUCCUGGCCAAGGCAACUUUGUUGGUAGCGAGGG ...((((((.((.((((....)))).)-)((------((.(((.....(((.(.((((((....).))))).).))).....))).)))).)))))). ( -29.40) >DroEre_CAF1 44464 98 - 1 UAUCUGCUCGUCAAUGGACAGCCAUUUGUGCCAUUCGAAUCAGUCGACCCUCGCCCAGGCUUUCGUCCUGGCCAAGGCAACUUUGUUGGCAGCGAGGG ..((.(((..(((((((((((....)))).))))).))...))).))(((((((.(((((....).))))((((((....))....)))).))))))) ( -35.40) >DroYak_CAF1 45691 98 - 1 UGUCUUUUCGACAAUGGACAUCCAUUCUUCGCGUUCUAAUCAAUCGACCCUCGCCCAGGCUUUCGUCCUGGCCAAGGCAACUUUGUUGGCAGCGAGGG .(((.....)))(((((....))))).....................(((((((.(((((....).))))((((((....))....)))).))))))) ( -31.50) >consensus UAUCUUUUCGUCAAUGGUCAUCCAUCG_AAC______CAUCAAUCGACCCUCGCCCAGGCUUUCGUCCUGGCCAAGGCAACUUUGUUGGCAGCGAGGG .............((((....))))......................(((((((.(((((....).))))((((((....))....)))).))))))) (-26.62 = -26.50 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:45 2006