Locus 4589

Sequence ID 3R_DroMel_CAF1
Location 12,082,206 – 12,082,326
Length 120
Max. P 0.988254
window7537 window7538

overview

Window 7

Location 12,082,206 – 12,082,326
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -34.30
Consensus MFE -29.10
Energy contribution -29.30
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.63
Structure conservation index 0.85
SVM decision value 2.11
SVM RNA-class probability 0.988254
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12082206 120 + 27905053
CCAUUUUCUUGAUAAGUUUUUAGCUGGCUGUGUGUCCUUUGUUGGCUCGUGCGAACCGUGAGGAAAUUUAUGAUGCACAGAGGGAAAAUACCAAACCGAAAACUUAUAAAUAAAGAAAUU
....((((((.(((((((((..(.(((.(((...((((((((..(((((((....((....)).....))))).))))))))))...))))))..)..))))))))).....)))))).. ( -34.40)
>DroSec_CAF1 18903 120 + 1
CCAUUUUCUUUAUAAGUUUUUAGCUGGCUGUGUGUCCUUUGUUGGCUCGUGCGAACCGUGAGGAAAUUUAUGAUGCACAGAGGGAAAAUACCGAACCGAAAACUUAUAAAUAAAGAAAUU
...((((.((((((((((((..(.(((.(((...((((((((..(((((((....((....)).....))))).))))))))))...))))))..)..)))))))))))).))))..... ( -33.80)
>DroSim_CAF1 19091 120 + 1
CCAUUUUCUUGAUAAGUUUUUAGCUGGCUGUGUGUCCUUUGUUGGCUCGUGCGAACCGUGAGGAAAUUUAUGAUGCACAGAGGGAAAAUACCGAACCGAAAACUUAUAAAUAAAGAAAUU
....((((((.(((((((((..(.(((.(((...((((((((..(((((((....((....)).....))))).))))))))))...))))))..)..))))))))).....)))))).. ( -33.70)
>DroEre_CAF1 20972 120 + 1
CCAUUUUCUUGAUAAGUUUUUAGCUGGCUGUGUGUCCUUUGUUGGCUCGUGCGAACCGUGAGGAAAUUUAUGAUGCACAGAGGGAAAAUACCGAACCGAAAACUUAUAAAUAACGAAAUU
...........(((((((((..(.(((.(((...((((((((..(((((((....((....)).....))))).))))))))))...))))))..)..)))))))))............. ( -30.00)
>DroYak_CAF1 21354 120 + 1
CCAUUUUCUUGAUAAGUUUUUAGCUGGCUGUGUGUCCUUUGUUGGCUCGUGCGAACUGUGAGGAAAUUUAUGAUGCACAGAGGGAAAAUACCGAGCUGAAAACUUAUAAAUAAAGAAAUU
....((((((.((((((((((((((..((((((.(((((.(((.((....)).)))...)))))..........)))))).((.......)).)))))))))))))).....)))))).. ( -39.60)
>consensus
CCAUUUUCUUGAUAAGUUUUUAGCUGGCUGUGUGUCCUUUGUUGGCUCGUGCGAACCGUGAGGAAAUUUAUGAUGCACAGAGGGAAAAUACCGAACCGAAAACUUAUAAAUAAAGAAAUU
....((((((.((((((((((......(((((((((....(((.((....)).))).(((((....)))))))))))))).((.......)).....)))))))))).....)))))).. (-29.10 = -29.30 +   0.20)

alignment

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secondary structure

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dotplot

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Window 8

Location 12,082,206 – 12,082,326
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.00
Mean single sequence MFE -25.47
Consensus MFE -23.56
Energy contribution -23.64
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.79
Structure conservation index 0.93
SVM decision value 1.81
SVM RNA-class probability 0.978238
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12082206 120 - 27905053
AAUUUCUUUAUUUAUAAGUUUUCGGUUUGGUAUUUUCCCUCUGUGCAUCAUAAAUUUCCUCACGGUUCGCACGAGCCAACAAAGGACACACAGCCAGCUAAAAACUUAUCAAGAAAAUGG
..((((((.....(((((((((..(((.(((..........((((...))))....((((...(((((....))))).....))))......))))))..))))))))).)))))).... ( -25.30)
>DroSec_CAF1 18903 120 - 1
AAUUUCUUUAUUUAUAAGUUUUCGGUUCGGUAUUUUCCCUCUGUGCAUCAUAAAUUUCCUCACGGUUCGCACGAGCCAACAAAGGACACACAGCCAGCUAAAAACUUAUAAAGAAAAUGG
..((((((....((((((((((..(((.(((..........((((...))))....((((...(((((....))))).....))))......))))))..)))))))))))))))).... ( -27.40)
>DroSim_CAF1 19091 120 - 1
AAUUUCUUUAUUUAUAAGUUUUCGGUUCGGUAUUUUCCCUCUGUGCAUCAUAAAUUUCCUCACGGUUCGCACGAGCCAACAAAGGACACACAGCCAGCUAAAAACUUAUCAAGAAAAUGG
..((((((.....(((((((((..(((.(((..........((((...))))....((((...(((((....))))).....))))......))))))..))))))))).)))))).... ( -25.30)
>DroEre_CAF1 20972 120 - 1
AAUUUCGUUAUUUAUAAGUUUUCGGUUCGGUAUUUUCCCUCUGUGCAUCAUAAAUUUCCUCACGGUUCGCACGAGCCAACAAAGGACACACAGCCAGCUAAAAACUUAUCAAGAAAAUGG
.....((((.((((((((((((..(((.(((..........((((...))))....((((...(((((....))))).....))))......))))))..)))))))))..))).)))). ( -24.40)
>DroYak_CAF1 21354 120 - 1
AAUUUCUUUAUUUAUAAGUUUUCAGCUCGGUAUUUUCCCUCUGUGCAUCAUAAAUUUCCUCACAGUUCGCACGAGCCAACAAAGGACACACAGCCAGCUAAAAACUUAUCAAGAAAAUGG
..((((((.....(((((((((.((((.(((.......(((.((((......................)))))))((......)).......))))))).))))))))).)))))).... ( -24.95)
>consensus
AAUUUCUUUAUUUAUAAGUUUUCGGUUCGGUAUUUUCCCUCUGUGCAUCAUAAAUUUCCUCACGGUUCGCACGAGCCAACAAAGGACACACAGCCAGCUAAAAACUUAUCAAGAAAAUGG
..((((((.....(((((((((.((((.(((..........((((...))))....((((...(((((....))))).....))))......))))))).))))))))).)))))).... (-23.56 = -23.64 +   0.08)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:50 2006