Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,082,021 – 12,082,126 |
Length | 105 |
Max. P | 0.722890 |
Location | 12,082,021 – 12,082,126 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.63 |
Mean single sequence MFE | -31.84 |
Consensus MFE | -27.73 |
Energy contribution | -27.93 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.87 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12082021 105 - 27905053 AGCCAUGAAAAUGGA-----AUGGAAAAUGCCAGGCGGCAACAAUAACAGC------AGCCAAGCCAGCCAA----GUCGAGGCUGUCUUUCCGUCAGUCAGCCACCCUGCGCCUCACCC ..((((....)))).-----(((((((..((..(((.((..........))------.)))..))(((((..----.....)))))..)))))))..(.(((.....))))......... ( -27.00) >DroSec_CAF1 18719 105 - 1 AGCCAUGAAAAUGGC-----AUGGAAAAUGCCAGGCGGCAACAACAACAGC------AGCCAAGCCAGGCAA----GUCGAGGCUGUCUUUCCGUCAGUCAGCCACCCUGCGCCUCACCC .(((((....)))))-----.(((......)))((((....).......((------((((......)))..----.....(((((.((.......)).)))))....))))))...... ( -35.50) >DroSim_CAF1 18907 105 - 1 AGCCAUGAAAAUGGA-----AUGGAAAAUGCCAGGCGGCAACAACAACAGC------AGCCAAGCCAGGCAA----GUCGAGGCUGUCUUUCCGUCAGUCAGCCACCCUGCGCCUCACCC ..((((....)))).-----.(((......)))((((....).......((------((((......)))..----.....(((((.((.......)).)))))....))))))...... ( -31.50) >DroEre_CAF1 20779 114 - 1 AGCCAUGAAAAUGGAAUGGAAUGGAAAAUGCCAGGCGGCAACAACGCCAAC------AGCCAAGCCAGGCAAGCCAGUCGAGGCUGUCUUUCCGUCAGUCAGCCACCCUGCGCCUCACCA ..((((....))))..(((..(((......)))((((((......)))...------.(((......)))..((.((..(.(((((.((.......)).))))).).)))))))...))) ( -35.10) >DroYak_CAF1 21164 111 - 1 AGCCAUGAAAAUGGA-----AUGGAAAAUGCCAGGCGGCAACAACACCAACAGCAACAGCCAAGCCAGGCAA----CUCGAGGCUGUCUUUCCGUCAGUCAGCCACCCUCUGCCUCACCC ..((((....)))).-----..((....((((.((((....)..........((....))...))).)))).----.....(((((.((.......)).)))))..))............ ( -30.10) >consensus AGCCAUGAAAAUGGA_____AUGGAAAAUGCCAGGCGGCAACAACAACAGC______AGCCAAGCCAGGCAA____GUCGAGGCUGUCUUUCCGUCAGUCAGCCACCCUGCGCCUCACCC ..((((....))))........((....((((.((((((...................)))..))).))))..........(((((.((.......)).)))))..))............ (-27.73 = -27.93 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:48 2006