Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,079,040 – 12,079,144 |
Length | 104 |
Max. P | 0.829543 |
Location | 12,079,040 – 12,079,144 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -42.27 |
Consensus MFE | -31.14 |
Energy contribution | -31.95 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.04 |
Mean z-score | -1.99 |
Structure conservation index | 0.74 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12079040 104 - 27905053 UCUGAAACUCCGG----CUUUAACUCUGGGCUGUGGGCUUUGGCUUUGGCU------UUGGGUCUGGCUACGACUGUGGCUCUGGCCCGAUCCACUACGGUCGGAGCGAGUCUG ...........((----(((...((((((.((((((((....))..(((..------(((((((.((((((....))))))..))))))).))))))))))))))).))))).. ( -41.50) >DroSec_CAF1 15775 92 - 1 UCUGAAACUCCGG----CUUUAACUCUGGGCUGUGGGCUUUG------GCU------UUGGGUCUGGCUACGACUGUGGCUCUGGCCCGAUCCACUACGGUCGGAGCG------ .......(..(((----(((.......))))))..)((((((------(((------(((((((.((((((....))))))..)))))))........))))))))).------ ( -36.10) >DroSim_CAF1 15959 92 - 1 UCUGAAACUCCGG----CUUUAACUCUGGGCUGUGGGCUUUG------GCU------UUGGGUCUGGCUACGACUGUGGCUCUGGCCCGAUCCACUACGGUCGGAGCG------ .......(..(((----(((.......))))))..)((((((------(((------(((((((.((((((....))))))..)))))))........))))))))).------ ( -36.10) >DroEre_CAF1 17752 108 - 1 UCUGAAACUCCGGCUGGCUUUAACUCUGGGCUGUGGGCUUCGGCUUUGGCUGUGGGUCUGGGUCUGGCUACGACUGUAGCUCUGGCCCGAUCCACUCCGGUCGGAGCG------ .......((((((((((...........(((((.((((....)))))))))(((((((.(((((.((((((....))))))..)))))))))))).))))))))))..------ ( -55.40) >consensus UCUGAAACUCCGG____CUUUAACUCUGGGCUGUGGGCUUUG______GCU______UUGGGUCUGGCUACGACUGUGGCUCUGGCCCGAUCCACUACGGUCGGAGCG______ .......................((((((.(((((((((........))).......(((((((.((((((....))))))..)))))))....))))))))))))........ (-31.14 = -31.95 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:38 2006