Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,078,583 – 12,078,724 |
Length | 141 |
Max. P | 0.978705 |
Location | 12,078,583 – 12,078,684 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.50 |
Mean single sequence MFE | -38.94 |
Consensus MFE | -25.12 |
Energy contribution | -25.76 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -2.30 |
Structure conservation index | 0.65 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12078583 101 + 27905053 GAAGAGUGGGAGAGCGGG---------U------GGUGCGUCUUCGCCCAUGUCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCGC----UCGGCCGCUGCGUUUUCGUCU ....(((((..(((((((---------(------((.(((....))))))).((((((.((((..((((.......)))))))).))))))))))----))..)))))(((....))).. ( -40.10) >DroSec_CAF1 15320 101 + 1 GAAGAGUGGGAGAGCGGG---------U------GGUGCGUCUUCGCCCCUGUCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCGC----UCGGCCGCUGCGUCUUCGUCU (((((((((..(((((((---------.------((.(((....)))))))(((((((.((((..((((.......)))))))).))))))))))----))..))))....))))).... ( -39.60) >DroSim_CAF1 15503 101 + 1 GAAGAGUGGGAGAGCGGG---------U------GGUGCGUCUUCGCCCCUGUCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCGC----UCGGCCGCUGCGUCUUCGUCU (((((((((..(((((((---------.------((.(((....)))))))(((((((.((((..((((.......)))))))).))))))))))----))..))))....))))).... ( -39.60) >DroEre_CAF1 17283 111 + 1 GGAGAGUGGGAGACCGGG---------UGGUGCUGGUGCGUCUUCGCCCCUGCCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCGCUCGCUCGGGCGCUUCGUCUUCGUCU ...((((((....))(((---------((((((.((.(((....))).)).))(((((.((((..((((.......)))))))).))))))))))))))))(((((...)))))...... ( -40.60) >DroYak_CAF1 17572 108 + 1 GAAGAGUGGGAGAGCGGGUAGUGCUGGUGGUGCUGGUGCGUCUUCGCCCCUGUCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCG------------CUUCGUCUUCGUCU (((((..(((.(.(((((..(..(..(.....)..)..)...)))))))))(((((((.((((..((((.......)))))))).)))))))..------------.....))))).... ( -34.80) >consensus GAAGAGUGGGAGAGCGGG_________U______GGUGCGUCUUCGCCCCUGUCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCGC____UCGGCCGCUGCGUCUUCGUCU ........(((((((((.................((.(((....)))))..(((((((.((((..((((.......)))))))).)))))))..............)))).))))).... (-25.12 = -25.76 + 0.64)
Location | 12,078,583 – 12,078,684 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.50 |
Mean single sequence MFE | -31.48 |
Consensus MFE | -20.90 |
Energy contribution | -22.14 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.19 |
Structure conservation index | 0.66 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688965 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12078583 101 - 27905053 AGACGAAAACGCAGCGGCCGA----GCGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGACAUGGGCGAAGACGCACC------A---------CCCGCUCUCCCACUCUUC ..........(.((.((..((----(((((((((((.(((((((.......))))..))).)))))))).((((((....))).))------)---------..)))))..)).)))... ( -32.10) >DroSec_CAF1 15320 101 - 1 AGACGAAGACGCAGCGGCCGA----GCGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGACAGGGGCGAAGACGCACC------A---------CCCGCUCUCCCACUCUUC ....(((((....(.((..((----(((((((((((.(((((((.......))))..))).)))))))).((.(((....))).))------.---------..)))))..)).)))))) ( -33.50) >DroSim_CAF1 15503 101 - 1 AGACGAAGACGCAGCGGCCGA----GCGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGACAGGGGCGAAGACGCACC------A---------CCCGCUCUCCCACUCUUC ....(((((....(.((..((----(((((((((((.(((((((.......))))..))).)))))))).((.(((....))).))------.---------..)))))..)).)))))) ( -33.50) >DroEre_CAF1 17283 111 - 1 AGACGAAGACGAAGCGCCCGAGCGAGCGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGGCAGGGGCGAAGACGCACCAGCACCA---------CCCGGUCUCCCACUCUCC .........((...(((....)))..))((((((((.(((((((.......))))..))).)))))))).((((((....)))...((.(((.---------...))))))))....... ( -28.60) >DroYak_CAF1 17572 108 - 1 AGACGAAGACGAAG------------CGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGACAGGGGCGAAGACGCACCAGCACCACCAGCACUACCCGCUCUCCCACUCUUC ....(((((.((((------------(.((((((((.(((((((.......))))..))).)))))))).((((((....)))....((.......))....)))))).))....))))) ( -29.70) >consensus AGACGAAGACGCAGCGGCCGA____GCGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGACAGGGGCGAAGACGCACC______A_________CCCGCUCUCCCACUCUUC ....(((((...(((((...........((((((((.(((((((.......))))..))).))))))))..(((((....))).)).................))))).......))))) (-20.90 = -22.14 + 1.24)
Location | 12,078,608 – 12,078,724 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.77 |
Mean single sequence MFE | -25.83 |
Consensus MFE | -19.26 |
Energy contribution | -19.66 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.09 |
Structure conservation index | 0.75 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12078608 116 + 27905053 UCUUCGCCCAUGUCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCGC----UCGGCCGCUGCGUUUUCGUCUUCUUCUUAUCCAACUUCGUUGAACCCCAGCUUGCUGGUAA .....((....(((((((.((((..((((.......)))))))).))))))).))----(((((.((((.(..((((......................))))..)))))..)))))... ( -25.15) >DroSec_CAF1 15345 116 + 1 UCUUCGCCCCUGUCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCGC----UCGGCCGCUGCGUCUUCGUCUUCUUCUUAUUCAACUCCGUUGAACCCCAGCUUGCUGGUAA .....((....(((((((.((((..((((.......)))))))).))))))).))----(((((.((((((....))...........((((((...))))))...))))..)))))... ( -26.10) >DroSim_CAF1 15528 116 + 1 UCUUCGCCCCUGUCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCGC----UCGGCCGCUGCGUCUUCGUCUUCUUCUUAUUCAACUCCGUUGAACCCCAGCUUGCUGGUAA .....((....(((((((.((((..((((.......)))))))).))))))).))----(((((.((((((....))...........((((((...))))))...))))..)))))... ( -26.10) >DroEre_CAF1 17314 120 + 1 UCUUCGCCCCUGCCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCGCUCGCUCGGGCGCUUCGUCUUCGUCUUCUUCUUAUUCAACUCCGUUGAACCCCAGCUCGCUGGUAA ..........((((..(........((((.......)))).((((((((((((((((....)))))....))))))............((((((...))))))....))))))..)))). ( -29.70) >DroYak_CAF1 17612 107 + 1 UCUUCGCCCCUGUCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCG------------CUUCGUCUUCGUCUUCUUCUUAUUCAACUCCGUUGAAC-CCAGCUUGCUGGUAA .....((....(((((((.((((..((((.......)))))))).))))))).)------------).....................((((((...)))))).-((((....))))... ( -22.10) >consensus UCUUCGCCCCUGUCUUCAAUUCAAUUCAUUUUUAUUAUGAUGAGCUGAAGACCGC____UCGGCCGCUGCGUCUUCGUCUUCUUCUUAUUCAACUCCGUUGAACCCCAGCUUGCUGGUAA ...........(((((((.((((..((((.......)))))))).)))))))....................................((((((...))))))..((((....))))... (-19.26 = -19.66 + 0.40)
Location | 12,078,608 – 12,078,724 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.77 |
Mean single sequence MFE | -30.72 |
Consensus MFE | -25.17 |
Energy contribution | -25.30 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.06 |
Mean z-score | -2.16 |
Structure conservation index | 0.82 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12078608 116 - 27905053 UUACCAGCAAGCUGGGGUUCAACGAAGUUGGAUAAGAAGAAGACGAAAACGCAGCGGCCGA----GCGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGACAUGGGCGAAGA ...((((....)))).(((((((...)))))))................(((.((......----)).((((((((.(((((((.......))))..))).))))))))....))).... ( -30.60) >DroSec_CAF1 15345 116 - 1 UUACCAGCAAGCUGGGGUUCAACGGAGUUGAAUAAGAAGAAGACGAAGACGCAGCGGCCGA----GCGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGACAGGGGCGAAGA ...((((....)))).(((((((...)))))))................(((.((......----)).((((((((.(((((((.......))))..))).))))))))....))).... ( -31.10) >DroSim_CAF1 15528 116 - 1 UUACCAGCAAGCUGGGGUUCAACGGAGUUGAAUAAGAAGAAGACGAAGACGCAGCGGCCGA----GCGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGACAGGGGCGAAGA ...((((....)))).(((((((...)))))))................(((.((......----)).((((((((.(((((((.......))))..))).))))))))....))).... ( -31.10) >DroEre_CAF1 17314 120 - 1 UUACCAGCGAGCUGGGGUUCAACGGAGUUGAAUAAGAAGAAGACGAAGACGAAGCGCCCGAGCGAGCGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGGCAGGGGCGAAGA ...((.((..(((.((((.(..((...(((.............)))...))..).)))).)))..)).((((((((.(((((((.......))))..))).)))))))).))........ ( -34.32) >DroYak_CAF1 17612 107 - 1 UUACCAGCAAGCUGG-GUUCAACGGAGUUGAAUAAGAAGAAGACGAAGACGAAG------------CGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGACAGGGGCGAAGA ...((((....))))-(((((((...)))))))................((...------------..((((((((.(((((((.......))))..))).)))))))).....)).... ( -26.50) >consensus UUACCAGCAAGCUGGGGUUCAACGGAGUUGAAUAAGAAGAAGACGAAGACGCAGCGGCCGA____GCGGUCUUCAGCUCAUCAUAAUAAAAAUGAAUUGAAUUGAAGACAGGGGCGAAGA ...((((....)))).(((((((...)))))))................(((.((..........)).((((((((.(((((((.......))))..))).))))))))....))).... (-25.17 = -25.30 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:37 2006