Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,077,900 – 12,078,019 |
Length | 119 |
Max. P | 0.545715 |
Location | 12,077,900 – 12,078,019 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.05 |
Mean single sequence MFE | -26.13 |
Consensus MFE | -22.86 |
Energy contribution | -22.78 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.19 |
Structure conservation index | 0.87 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12077900 119 + 27905053 AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGCCGACGCAAAAUAUGCGCACAUCAAAAAAGUCUGCCUCAUACAACGCAACCCACA-AACUCCCCACCACCCCAAAAACCA .((.(((.((.((.....((((((((.....((((...(((.((((((.....)))(.....)......))).)))))))....))))..)))).-...))))))).))........... ( -26.40) >DroSec_CAF1 14648 119 + 1 AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGCCGACGCAAAAUAUGCGCACAUCAAAAAAGUCUGCCUCAUACAACGCAACCCACA-AACUCCCCACCACCCCAAAAAGCA .((.(((.((.((.....((((((((.....((((...(((.((((((.....)))(.....)......))).)))))))....))))..)))).-...))))))).))........... ( -26.40) >DroSim_CAF1 14842 119 + 1 AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGCCGACGCAAAAUAUGCGCACAUCAAAAAAGUCUGCCUCAUACAACGCAACCCACA-AACUCCCCACCACCCCAAAAAGCA .((.(((.((.((.....((((((((.....((((...(((.((((((.....)))(.....)......))).)))))))....))))..)))).-...))))))).))........... ( -26.40) >DroEre_CAF1 16586 119 + 1 AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGUCGACGCAAAAUAUGCGCACGUCAAAAAAGUCUGCCACACACAACGCAACCCACAAAACUCC-GCCCAACCCAAAAAGCA .....((.((((......((((((((....)......((((.((((((.....)))(.....)......))).))))........)))..)))).......)-)))))............ ( -24.52) >DroYak_CAF1 16872 118 + 1 AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGCCGACGCAAAAUAUGCGCACAUCAAAAAAGACUGCCACCUACAACGCAGCCCACG-AACUCC-ACCCAAUCCAAAAAGCA ..(((((.(((.......(((((.((((...........)))).((((.....))))................)))))..........)))))))-).....-................. ( -26.93) >consensus AGUCGUGCGGCGAACUCCGUGGUGCGGCAACAUGAAAUGGCCGACGCAAAAUAUGCGCACAUCAAAAAAGUCUGCCUCAUACAACGCAACCCACA_AACUCCCCACCACCCCAAAAAGCA .((.(((.((((.(((...(((((((((...........)))).((((.....))))..)))))....))).)))).)))))...................................... (-22.86 = -22.78 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:33 2006