Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,073,714 – 12,073,834 |
Length | 120 |
Max. P | 0.962354 |
Location | 12,073,714 – 12,073,834 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -35.06 |
Consensus MFE | -31.18 |
Energy contribution | -31.66 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.69 |
Structure conservation index | 0.89 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12073714 120 + 27905053 AACAGCAGCAAUUGAGUACGGCAAAAAAGGGGAAGGCAGUGGAGUGGUUUGAAACAUUCCAUCUCUCUUUCUCUCUUCCGCACUCCCUUUCUCUUUUGCUCAGCCCACGUAGUGGUGUAC ....(.(((((..(((....((..((.(((((((((.(((((((((........))))))).)).))))))))).))..)).........)))..)))))).((((((...)))).)).. ( -35.52) >DroSec_CAF1 10335 120 + 1 AACAGCAGCAACUGAGUACGGCAAAAAAGGGGAAGGCAGUGGAGUGGUUUGAAACAUUCCAUCUCUCUUUCUCCCUUCCGCACUCCCUUUCUCUUUUGCUCAGCCCAUGUAGUGGUGUAC ....(.(((((..(((...((.....((((((((((..((((((((........))))))))....))))).)))))........))...)))..)))))).((((((...)))).)).. ( -34.22) >DroSim_CAF1 10765 120 + 1 AACAGCAGCAACUGAGUACGGCAAAAAAGGGGAAGGCAGUGGAGUGGUUUGAAACAUUCCAUCUCUCUUUCUCUCUUCCGCACUCCCUUUCUCUUUUGCUCAGCCCACGUAGUGGUGUAC ....(.(((((..(((....((..((.(((((((((.(((((((((........))))))).)).))))))))).))..)).........)))..)))))).((((((...)))).)).. ( -34.72) >DroEre_CAF1 12309 117 + 1 AA---CAGCAAUGGAAUACGGCAAAAAAGGGGAAGGCAGUGGAGUGGUUUGAAACAUUCCAUCUCUCUUUCUCUCUUCCGCACUCCCUUUCUCUUUUGCUCAGCCCACGUAGUGGUGUAC ..---.(((((.((((....((..((.(((((((((.(((((((((........))))))).)).))))))))).))..)).......))))...)))))..((((((...)))).)).. ( -33.00) >DroYak_CAF1 12564 120 + 1 AACAACACCAACUGAAUACGGCAAAAAAGAGGAAGGCAGUGGAGUGGUUUGAAACAUUCCAUCUCUCUUUCUCUCUUCCGCACUCCCUUUCUCUUUUGCUCAGCCCACGUAGUGGUGUAC ....((((((.(((.....(((..((((((((((((.((((((((((..((...))..))).)))...............)))).)))))))))))).....)))....))))))))).. ( -37.86) >consensus AACAGCAGCAACUGAGUACGGCAAAAAAGGGGAAGGCAGUGGAGUGGUUUGAAACAUUCCAUCUCUCUUUCUCUCUUCCGCACUCCCUUUCUCUUUUGCUCAGCCCACGUAGUGGUGUAC ......(((((..(((....((..((.(((((((((.(((((((((........))))))).)).))))))))).))..)).........)))..)))))..((((((...)))).)).. (-31.18 = -31.66 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:08 2006