Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,073,103 – 12,073,220 |
Length | 117 |
Max. P | 0.999821 |
Location | 12,073,103 – 12,073,220 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.46 |
Mean single sequence MFE | -22.22 |
Consensus MFE | -21.09 |
Energy contribution | -21.09 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.36 |
Structure conservation index | 0.95 |
SVM decision value | 4.16 |
SVM RNA-class probability | 0.999821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12073103 117 + 27905053 C---AACAACAGCAACAGAAGCCACUACACGUGCAAUGUCCAACUACCAAUGCACUUCCACACGCACACCAUUAGCAUUAUUAAAUCGCCAGCCGCAAAUUUGCGGUUGCGUCACCUACU .---.......((...((......))....(((((.((.........)).)))))........)).....................(((.(((((((....))))))))))......... ( -21.10) >DroSec_CAF1 9634 111 + 1 C---AACA------ACAGAAGCCACUACACGUGCAAUGUCCAACUACCAAUGCACUUCCACACGCACACCAUUAGCAUUAUUAAAUCGCCAGCCGCAAAUUUGCGGUUGCGUCACCUACU .---....------...((.((........(((((.((.........)).)))))........)).....................(((.(((((((....))))))))))))....... ( -21.09) >DroSim_CAF1 10065 111 + 1 C---AACA------ACAGAAGCCACUACACGUGCAAUGUCCAACUACCAAUGCACUUCCACACGCACACCAUUAGCAUUAUUAAAUCGCCAGCCGCAAAUUUGCGGUUGCGUCACCUACU .---....------...((.((........(((((.((.........)).)))))........)).....................(((.(((((((....))))))))))))....... ( -21.09) >DroEre_CAF1 11630 111 + 1 C---AACA------ACAGAAGCCACUACACGUGCAAUGUCCAACUACCAAUGCACUUGCACACGCACACCAUUAGCAUUAUUAAAUCGCAAGCCGCAAAUUUGCGGUUGCGUCACCUACU .---....------................((((((.((.((........)).))))))))((((.........(((((....))).)).(((((((....)))))))))))........ ( -23.90) >DroYak_CAF1 11873 114 + 1 CAACAACA------ACAGAAGCCAUUACACGUGCAAUGUCCAACUACCAAUGCACUUGCACACGCACACCAUUAGCAUUAUUAAAUCGCAAGCCGCAAAUUUGCGGUUGCGUCACCUACU ........------................((((((.((.((........)).))))))))((((.........(((((....))).)).(((((((....)))))))))))........ ( -23.90) >consensus C___AACA______ACAGAAGCCACUACACGUGCAAUGUCCAACUACCAAUGCACUUCCACACGCACACCAUUAGCAUUAUUAAAUCGCCAGCCGCAAAUUUGCGGUUGCGUCACCUACU .................((.((........(((((.((.........)).)))))........)).....................(((.(((((((....))))))))))))....... (-21.09 = -21.09 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:07 2006