Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,072,495 – 12,072,615 |
Length | 120 |
Max. P | 0.722247 |
Location | 12,072,495 – 12,072,615 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.67 |
Mean single sequence MFE | -36.98 |
Consensus MFE | -32.68 |
Energy contribution | -33.04 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.13 |
Mean z-score | -1.28 |
Structure conservation index | 0.88 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12072495 120 + 27905053 CCGAGCCCCUUGUUAAUGACUUUCGAAUGGGGCGAGGGUUAAGUUCAGAUCCCUAGAUAAGAGCUAUCGUAGUCGGUGGGUUCAACAAACCACAAGUUAGCUAGUUAAGGGAUUUGAAGG ((..(((((...(..(......)..)..)))))..))......(((((((((((.(((...(((((.((....))((((..........))))....))))).))).))))))))))).. ( -41.10) >DroSec_CAF1 9028 120 + 1 CCGAGCCCCUUGUUAAUGACUUUCGAUUGGGCCGAGGGUUAAGUUCAGAUCCCUAGAUAAGAGCUAUCGUAGGCGGUGGGUUCAACAAACUUCAGGUUGGCUAGUUGAGGGAUUUGAAGG ..((((((.(((((..(((((((((.......)))))))))(((((..(((....)))..)))))......))))).))))))......(((((((((..(.....)...))))))))). ( -36.10) >DroSim_CAF1 9460 120 + 1 CCGAGCCCCCUGUUAAUGACUUUCGAUUGGGCCGAGGGUUAAGUUCAGAUCCCUAGAUAAGAGCUAUCGUAGGCGGUGGGUUCAACAAAUUUCAGGUUGGCUAGUUAAGGGAUUUGAAGG ((((((((.(((((..(((((((((.......)))))))))(((((..(((....)))..)))))......))))).))))))..(((((..(...((((....)))))..)))))..)) ( -36.00) >DroEre_CAF1 11048 120 + 1 CCGAGCCCCUUGUUAAUGACUCUCAAUUGGCCCGAGGGUUAAGUUCAGAUCCCUAGAUAAGAGCUAUCAAAGGCAGUGGGUUCAACAAACUUCAAGUUAGCUAGUUAAGGGAUUUGAAGG ..((((((.(((((..((((((((.........))))))))(((((..(((....)))..)))))......))))).))))))......(((((((((..((.....)).))))))))). ( -37.80) >DroYak_CAF1 11237 120 + 1 CCGAGCCCCUUGUUAAUGACGCUCGAUUGUCCCGAGGGUUAAGUUCAGAUCCCUAGAUAAGAGCUAUCGUAGGCAGUCGGUUCAACAAACCUCAAGUUGGCUAGUUAAGGGAUUUGAAGG ((..............((((.((((.......)))).))))..(((((((((((.(((...(((((.((....)....((((.....))))....).))))).))).))))))))))))) ( -33.90) >consensus CCGAGCCCCUUGUUAAUGACUUUCGAUUGGGCCGAGGGUUAAGUUCAGAUCCCUAGAUAAGAGCUAUCGUAGGCGGUGGGUUCAACAAACUUCAAGUUGGCUAGUUAAGGGAUUUGAAGG ..((((((.(((((..(((((((((.......)))))))))(((((..(((....)))..)))))......))))).))))))......(((((((((..((.....)).))))))))). (-32.68 = -33.04 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:06 2006