Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,072,111 – 12,072,265 |
Length | 154 |
Max. P | 0.737629 |
Location | 12,072,111 – 12,072,228 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.48 |
Mean single sequence MFE | -39.23 |
Consensus MFE | -28.79 |
Energy contribution | -29.35 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -1.89 |
Structure conservation index | 0.73 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12072111 117 - 27905053 UUCACCAGCGGGACGAAACAAAAGUCGUGACUGGGACUCAAAUCGCUCAUGCGACGCGGUGCCAUCGCCCGUCCCCUUUCGUGGCAGU---CUUUUGUUUACAUUUUUAGAAGACUGGUA .((((.((.((((((..((....)).((((.(((.(((....((((....))))...))).))))))).))))))))...))))((((---((((((..........))))))))))... ( -39.30) >DroSim_CAF1 9089 115 - 1 UUCACCUGCGGGACGACA--AAAGUCGUGACUGGGACUCAAAUCGCUCAUGCGACGCGGUGCCAUCGCCCGUCCCCUUUCGUGGCAGU---CUUUUGUUUACAUUUUUAGAAGACUGGUA .((((..(.((((((((.--...)))((((.(((.(((....((((....))))...))).)))))))..))))))....))))((((---((((((..........))))))))))... ( -41.00) >DroEre_CAF1 10654 117 - 1 UUCACCUGCGA-CUGACA--CAAGUCGUGACUGGGACCCAAAUCGCUCAUGCGACGCGGUGCCAUCGCACGUCCCCUUUCGUAGCAGUCGUCUUUUGUUUACAUUUUUAGAAGACUGGUA ...(((.((((-((....--..))))))((((((.(((....((((....))))...))).))...(((((........))).))))))((((((((..........)))))))).))). ( -38.00) >DroYak_CAF1 10850 115 - 1 UUCACCUGCGGGACGACA--CAAGUCGUGACUGGGUCCCAAAUCGCUCAUGCGACGCGGUGCCAUCGCCCGUCCUCUUUCGUGGCAGU---CUUUUGUUUACAUUUUUAGAAGACUGGUA .((((....((((((((.--...)))((((...((..((...((((....))))...))..)).))))..))))).....))))((((---((((((..........))))))))))... ( -38.60) >consensus UUCACCUGCGGGACGACA__AAAGUCGUGACUGGGACCCAAAUCGCUCAUGCGACGCGGUGCCAUCGCCCGUCCCCUUUCGUGGCAGU___CUUUUGUUUACAUUUUUAGAAGACUGGUA .....((((((((((((......)))))....(((((.....((((....)))).(((((...)))))..)))))..)))))))((((...((((((..........))))))))))... (-28.79 = -29.35 + 0.56)
Location | 12,072,148 – 12,072,265 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.01 |
Mean single sequence MFE | -37.30 |
Consensus MFE | -30.61 |
Energy contribution | -31.80 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.12 |
Mean z-score | -1.67 |
Structure conservation index | 0.82 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12072148 117 - 27905053 UAGCAGGUCCAUAACUUAGU---UUGGAUUUUUAUCCUGUUUCACCAGCGGGACGAAACAAAAGUCGUGACUGGGACUCAAAUCGCUCAUGCGACGCGGUGCCAUCGCCCGUCCCCUUUC .((((((((((.........---.)))).......)))))).....((.((((((..((....)).((((.(((.(((....((((....))))...))).))))))).))))))))... ( -33.51) >DroSim_CAF1 9126 115 - 1 UAGCAGGUCCAUAACUUAGU---UUGGAUUUCUUUCCUGUUUCACCUGCGGGACGACA--AAAGUCGUGACUGGGACUCAAAUCGCUCAUGCGACGCGGUGCCAUCGCCCGUCCCCUUUC ..((((((....(((.....---..(((......))).)))..))))))((((((((.--...)))((((.(((.(((....((((....))))...))).)))))))..)))))..... ( -40.00) >DroEre_CAF1 10694 117 - 1 UAGCAGGUCCAUUACUUAGUAGGUUGGAUUUCUUUCUUGUUUCACCUGCGA-CUGACA--CAAGUCGUGACUGGGACCCAAAUCGCUCAUGCGACGCGGUGCCAUCGCACGUCCCCUUUC ..((.(((((.((((...((((((..(((.........)))..))))))((-((....--..))))))))...)))))....((((....)))).)).((((....)))).......... ( -37.40) >DroYak_CAF1 10887 118 - 1 UAGCAGGUCCAUAACUUAGUAGGAUGCAUUUCUUUCCUGUUUCACCUGCGGGACGACA--CAAGUCGUGACUGGGUCCCAAAUCGCUCAUGCGACGCGGUGCCAUCGCCCGUCCUCUUUC ..((((((....(((.....((((......))))....)))..))))))((((((((.--...)))((((...((..((...((((....))))...))..)).))))..)))))..... ( -38.30) >consensus UAGCAGGUCCAUAACUUAGU___UUGGAUUUCUUUCCUGUUUCACCUGCGGGACGACA__AAAGUCGUGACUGGGACCCAAAUCGCUCAUGCGACGCGGUGCCAUCGCCCGUCCCCUUUC ..((((((....(((..........(((......))).)))..))))))((((((((......)))((((.(((.(((....((((....))))...))).)))))))..)))))..... (-30.61 = -31.80 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:05 2006