Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,071,506 – 12,071,626 |
Length | 120 |
Max. P | 0.987554 |
Location | 12,071,506 – 12,071,626 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.15 |
Mean single sequence MFE | -42.38 |
Consensus MFE | -39.76 |
Energy contribution | -40.56 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.94 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12071506 120 + 27905053 UUGGCGCCGGACCGGCAUGGCACGGAUGUGUACAUGGAAUAUAGGAGGCGGCCGCCUUUGGUGAUGGUGAUUUCACUUUCAGAUACAUUAACACAAGUGCGCUGAAAUGCGCGCGCCUUU ..(((.(((..((.....))..))).(((((..(((.......((((((....))))))..(((.((((....)))).)))....)))..))))).((((((......)))))))))... ( -43.00) >DroSec_CAF1 8035 120 + 1 UUGGCGCCGGACCGGCAUGGCACGGAUGUGUACAUGGAAUAUAGGAGGCGGCCGCCUUUGGUGAUUGUGAUUUCACUUUCAGAUACAUUAACACAAGUGCGCUGAAAUGCGCGCGCCUUU ..(((((((...)))).((.....(((((((...((((.....((((((....))))))(((((........))))))))).)))))))....)).((((((......)))))))))... ( -42.80) >DroSim_CAF1 8471 120 + 1 UUGGCGCCGGACCGGCAUGGCACGGAUGUGUACAUGGAAUAUAGGAGGCGGCCGCCUUUGGUGAUGGUGAUUUCACUUUCAGAUACAUUAACACAAGUGCGCUGAAAUGCGCGCGCCUUU ..(((.(((..((.....))..))).(((((..(((.......((((((....))))))..(((.((((....)))).)))....)))..))))).((((((......)))))))))... ( -43.00) >DroEre_CAF1 10046 114 + 1 UUGGCGCCGGACCGGCAUGGCACGGAUGUGUACAUGGAAUAUAGGAGGCGGCCGCCUUUGGU------GAUUUCACUUUCAGAUACAUUAACACAAGUGCGCUGAAAUGCGCGCGCCUUU ..(((((((...)))).((.....(((((((...((((.....((((((....))))))(((------(....)))))))).)))))))....)).((((((......)))))))))... ( -41.40) >DroYak_CAF1 10248 114 + 1 UUGGCGCCGGACCGGCAUGGUACGGAUGUGUACAUGGAAUAUAGGAGGCGGCCGCCUUUGGU------GAUUUCACUUUCAGAUACAUUAACACAAGUGCGCUGAAUUGCGCGCGCCUUU ..(((((((...))))...((...(((((((...((((.....((((((....))))))(((------(....)))))))).)))))))...))..((((((......)))))))))... ( -41.70) >consensus UUGGCGCCGGACCGGCAUGGCACGGAUGUGUACAUGGAAUAUAGGAGGCGGCCGCCUUUGGUGAU_GUGAUUUCACUUUCAGAUACAUUAACACAAGUGCGCUGAAAUGCGCGCGCCUUU ..(((((((...)))).((.....(((((((...((((.....((((((....))))))(((((........))))))))).)))))))....)).((((((......)))))))))... (-39.76 = -40.56 + 0.80)
Location | 12,071,506 – 12,071,626 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.15 |
Mean single sequence MFE | -36.94 |
Consensus MFE | -33.58 |
Energy contribution | -34.22 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.80 |
Structure conservation index | 0.91 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12071506 120 - 27905053 AAAGGCGCGCGCAUUUCAGCGCACUUGUGUUAAUGUAUCUGAAAGUGAAAUCACCAUCACCAAAGGCGGCCGCCUCCUAUAUUCCAUGUACACAUCCGUGCCAUGCCGGUCCGGCGCCAA ...(((((((((......))))...(((((..(((....(((..(((....)))..)))....((((....)))).........)))..)))))..((..((.....))..))))))).. ( -37.80) >DroSec_CAF1 8035 120 - 1 AAAGGCGCGCGCAUUUCAGCGCACUUGUGUUAAUGUAUCUGAAAGUGAAAUCACAAUCACCAAAGGCGGCCGCCUCCUAUAUUCCAUGUACACAUCCGUGCCAUGCCGGUCCGGCGCCAA ...(((((((((......))))...(((((..(((....(((..(((....)))..)))....((((....)))).........)))..)))))..((..((.....))..))))))).. ( -37.70) >DroSim_CAF1 8471 120 - 1 AAAGGCGCGCGCAUUUCAGCGCACUUGUGUUAAUGUAUCUGAAAGUGAAAUCACCAUCACCAAAGGCGGCCGCCUCCUAUAUUCCAUGUACACAUCCGUGCCAUGCCGGUCCGGCGCCAA ...(((((((((......))))...(((((..(((....(((..(((....)))..)))....((((....)))).........)))..)))))..((..((.....))..))))))).. ( -37.80) >DroEre_CAF1 10046 114 - 1 AAAGGCGCGCGCAUUUCAGCGCACUUGUGUUAAUGUAUCUGAAAGUGAAAUC------ACCAAAGGCGGCCGCCUCCUAUAUUCCAUGUACACAUCCGUGCCAUGCCGGUCCGGCGCCAA ...(((((((((......))))...(((((..(((.........(((....)------))...((((....)))).........)))..)))))..((..((.....))..))))))).. ( -36.10) >DroYak_CAF1 10248 114 - 1 AAAGGCGCGCGCAAUUCAGCGCACUUGUGUUAAUGUAUCUGAAAGUGAAAUC------ACCAAAGGCGGCCGCCUCCUAUAUUCCAUGUACACAUCCGUACCAUGCCGGUCCGGCGCCAA ...(((((((((......))))...(((((..(((.........(((....)------))...((((....)))).........)))..)))))..((.(((.....))).))))))).. ( -35.30) >consensus AAAGGCGCGCGCAUUUCAGCGCACUUGUGUUAAUGUAUCUGAAAGUGAAAUCAC_AUCACCAAAGGCGGCCGCCUCCUAUAUUCCAUGUACACAUCCGUGCCAUGCCGGUCCGGCGCCAA ...(((((((((......))))...(((((..(((.........((((........))))...((((....)))).........)))..)))))..((.(((.....))).))))))).. (-33.58 = -34.22 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:01 2006